PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11666
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 742aa    MW: 86204.4 Da    PI: 8.4557
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11666genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1522.4e-1655140190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                                +fY+++Ak  GF +r+++ k +          +vC +egk  e++k+  +++ +r+ ++ r+gC a+l+v+kek +++w ++++
  Tp57577_TGAC_v2_mRNA11666  55 EFYKSFAKIKGFGIRIRSRKPN-------YCILVCVREGKLPEKSKNdgNTEVKRKCSTMRMGCPASLVVSKEKnNDTWAIKSF 131
                                6***************987766.......5679*******99999887778888899999*************99********* PP

                       FAR1  82 eleHnHela 90 
                                +++HnH +a
  Tp57577_TGAC_v2_mRNA11666 132 DNKHNHVMA 140
                                ******876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-1355139IPR004330FAR1 DNA binding domain
PfamPF105513.1E-34257351IPR018289MULE transposase domain
PROSITE profilePS5096610.46538574IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-7543574IPR007527Zinc finger, SWIM-type
SMARTSM005754.3E-5549576IPR006564Zinc finger, PMZ-type
SuperFamilySSF577565.44E-5717739IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MDLDTINFSD MMMMAVSDDT KLETHSNIHG EPQIIDENIE PHVGMKFNSL EEALEFYKSF  60
AKIKGFGIRI RSRKPNYCIL VCVREGKLPE KSKNDGNTEV KRKCSTMRMG CPASLVVSKE  120
KNNDTWAIKS FDNKHNHVMA SPKSVAYLKC HKKMNGAAKN LVEKFCEEGL PTGKVATMFN  180
DSDLVFSNRD CWNHMRNVRM KILDVGDAQA VFNYCKHKQS QNSDFFYAIQ CDDEARMVNL  240
FWVDARSRLA YQHFGDVVTF DTTYKTNKYS MPFAPFTGLN HHLQSILFGC ALLRDESEIS  300
FTWLFETWLQ AMNGKKPISI ITDQDLAIGA AVAKVFPHTR HRLCLWHIRK KFPEKLAHIY  360
HKDPKFKYEL KRCIRESPTI KDFEDDWQRI MDMYNLKENE WLQRLFEIRE SWIPVYNRST  420
FFAGMNTTQR SESINSFFDS FVNSTTTLED FVVKFEKAVN NRYEAEKRED FESRHKLRIL  480
SIKSKIEVHA ESIYTRNVFG KFQDELAQVS HFTKEKIERN GSQRKYQVSH YSKTKDTFMV  540
DINLDSKDAR CGCQLFEFMG ILCRHILVIF QAKNILEIPS QYILHRWTKE ANRYLEVSVN  600
AQNYELDILR SMHVQQQFSK FANFAKQSEE AYKFIMAEFE RICNTLATMG LGLSDLNEAS  660
VDLQQQNMGE TLDDNVSYFN IKDPHVSLTK GRKKDSDKAP VAERFKSGME LSMEKASGKS  720
RKCGYCGEYG HYQSTCKSKT T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11666
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634520.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2Z6P1T90.0A0A2Z6P1T9_TRISU; Uncharacterized protein
STRINGGLYMA15G20510.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-157FAR1-related sequence 5