PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11532
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 642aa    MW: 75186.4 Da    PI: 10.0315
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11532genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.6e-11211301198
                                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                f+ +l+ps++  ++ l +pk + e++ +g  +++  ++l+ ++g + e+      + g+++++k+Wk F k+ +L  g +++Fk
  Tp57577_TGAC_v2_mRNA11532 211 FELQLSPSYAYGRC-LKIPKLYREKYwKGT-PNP--IILKLPNGYEQEMSW--VERNGEILFQKNWKTFSKDLNLSHGCVLTFK 288
                                7889*********9.***********7444.455..999999999999999..888889************************* PP

                                E-SSSEE..EEEEE- CS
                         B3  84 ldgrsefelvvkvfr 98 
                                ++g s f  +vkvf 
  Tp57577_TGAC_v2_mRNA11532 289 YIGGSHF--KVKVFG 301
                                **99999..888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-8797IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-10799IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.016999IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-15206304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-17207310IPR015300DNA-binding pseudobarrel domain
CDDcd100173.42E-8209300No hitNo description
PROSITE profilePS508638.938210303IPR003340B3 DNA binding domain
SMARTSM010192.6E-8211303IPR003340B3 DNA binding domain
PfamPF023621.9E-7211300IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-14369469IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-13370467IPR015300DNA-binding pseudobarrel domain
CDDcd100172.81E-10373469No hitNo description
SMARTSM010190.63374471IPR003340B3 DNA binding domain
PROSITE profilePS508638.656374471IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-11491577IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-8492578IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.2492580IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MSSYIPRKFF RIMRDEDLQN GEIRVPKEYV ELHWKSVSNP VVFILPNGAT QKIYWVKRNG  60
DIWFQKNWEK FAKFLKFRFK VNFEYIGGSY FKIEIYGVNT LEIDYSNIKF IDEVNAAENR  120
NEVEEAIEVS DDSDKSLDES ELPTQTQRTK NGKRKMAMDS NANHQNISGS NRGDMNKKAK  180
KCSTSKANNG RGRKRGGIIK ERTSCGENPS FELQLSPSYA YGRCLKIPKL YREKYWKGTP  240
NPIILKLPNG YEQEMSWVER NGEILFQKNW KTFSKDLNLS HGCVLTFKYI GGSHFKVKVF  300
GPKCLEINYS DIRSENEDVV EAKEIIEEVS DEIPMQAQRK TNGKRKFQGR NRGNMVKKVK  360
KYPTNEDVNV ENPFFEVVMT NFYVKGCFLW IQSQFSREQL NNFRGIATLR VGKDTPMEVK  420
IRFDDNYKKA MMCAGWKLFS KKYNLQVDDV CKFVMTQRRP PSFIVIINRA RKRSSPKNLQ  480
DSESGIMVKH FKFKIYVKDD YNYPRIPKKY VEKYWKHLSN PIFLRFPNGV EKKIFWVERN  540
GYICFQKNWK NISKSLKYGY LLTFKYLGGT YFKVKIFAGG TYFKVKIFAG NALEINYSNI  600
KSIDEDEVVE DEEVIEVVTE EAWSKGLKNV QQVKIPFLKL N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11532
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631285.18e-90B3 domain-containing transcription factor VRN1
TrEMBLA0A392M2L31e-114A0A392M2L3_9FABA; B3 DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-09B3 family protein