PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11528
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 745aa    MW: 85994.7 Da    PI: 8.6647
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11528genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.1e-1468163199
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                f+ +ltps+   +  l +p +f +++ ++   + t t++  +    e+k++++k ++r + t GWk+F +  +L++gD++ F++
  Tp57577_TGAC_v2_mRNA11528  68 FELKLTPSYIQGN-TLKIPSEFSRKYLSN--FKGTATIRVGEDIPIELKMSFDKIDRRSIVTCGWKSFSQKYNLQVGDVCKFEM 148
                                6677877776666.5***********655..3347899999999***************************************9 PP

                                -SSSEE..EEEEE-S CS
                         B3  85 dgrsefelvvkvfrk 99 
                                ++++ f++++++ r+
  Tp57577_TGAC_v2_mRNA11528 149 TRSKPFSFTITITRA 163
                                998***999999875 PP
2B340.93.6e-131962691794
                                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                ++p++f+e+h g + + ++l+    +g+sW vk+  +++ +r   l  GW +F k+ +Lk gD++ F+l+++++f ++v
  Tp57577_TGAC_v2_mRNA11528 196 YIPNTFLERHRGCHGKFVELK---VDGKSWLVKV--NNYCKRgSRLCFGWTKFMKDCKLKIGDSCHFELIDEEKFVFKV 269
                                79********77765544444...699*******..6666555778899*********************999994444 PP
3B346.37.6e-155115961398
                                TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                         B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                                + rl++p  f +e++++   +   t+++ ++ ++W v+l+++ + + + +++GW++F ++++L++gD + F++++r+  +++++
  Tp57577_TGAC_v2_mRNA11528 511 KLRLTIPSWFSKEYMNE-LLQGNATIRSvSDEKTWHVTLSFDERNRNFKMGGGWRSFSREHNLQVGDECKFEMTEREPLSFTIT 593
                                3589**********544.44457888885777****************************************998898888888 PP

                                EE- CS
                         B3  96 vfr 98 
                                +++
  Tp57577_TGAC_v2_mRNA11528 594 IVQ 596
                                876 PP
4B342.11.6e-13655734890
                                -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                         B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                                 +v++++ l++p +f+++h++++ +s++l++      +W v+++y+   +   +tkGWkeFv++ ++k gD++ F++++ ++ 
  Tp57577_TGAC_v2_mRNA11528 655 VSVTTLDKLIIPSEFLKRHNISNGNSVELKV---GEGTWFVEVSYNEDLDYGGFTKGWKEFVRECKVKIGDTCFFEMIDLQNH 734
                                689999*************999777766664...4589*******99999999***********************8753443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1862160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-1863166IPR015300DNA-binding pseudobarrel domain
CDDcd100174.39E-1366162No hitNo description
PROSITE profilePS5086310.30667164IPR003340B3 DNA binding domain
SMARTSM010192.7E-568164IPR003340B3 DNA binding domain
PfamPF023625.5E-1270163IPR003340B3 DNA binding domain
PROSITE profilePS508639.742180275IPR003340B3 DNA binding domain
SMARTSM010197.3E-4186273IPR003340B3 DNA binding domain
SuperFamilySSF1019361.41E-12191268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-14193269IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-10196269IPR003340B3 DNA binding domain
CDDcd100175.57E-10196271No hitNo description
Gene3DG3DSA:2.40.330.103.7E-10287379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-11289379IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.01291380IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-16492598IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-18493594IPR015300DNA-binding pseudobarrel domain
CDDcd100172.25E-17496594No hitNo description
SMARTSM010195.7E-9498598IPR003340B3 DNA binding domain
PROSITE profilePS5086312.887499598IPR003340B3 DNA binding domain
PfamPF023625.1E-12511595IPR003340B3 DNA binding domain
PROSITE profilePS5086310.518648744IPR003340B3 DNA binding domain
SMARTSM010192.3E-6653739IPR003340B3 DNA binding domain
PfamPF023622.2E-11654734IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-14655739IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-15656741No hitNo description
Gene3DG3DSA:2.40.330.103.0E-16657741IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MKVLEVEVND DRDKSETFKQ AQRIKVNGKR KVHMDFETPE EKFLSANKGS MTKKAKKCPT  60
TSNENPCFEL KLTPSYIQGN TLKIPSEFSR KYLSNFKGTA TIRVGEDIPI ELKMSFDKID  120
RRSIVTCGWK SFSQKYNLQV GDVCKFEMTR SKPFSFTITI TRAREKPNPK KLQDSEGRDV  180
MKHDTFQICV NFSYPYIPNT FLERHRGCHG KFVELKVDGK SWLVKVNNYC KRGSRLCFGW  240
TKFMKDCKLK IGDSCHFELI DEEKFVFKVT FKLASMSIHH GRGSEAKGIH FYQTIQLRQL  300
QDQQLMVPRN FVERYWKDVS NPISLRLPNE SVCKMFWVQL GDDIWLQDWK RFARSLRCGD  360
LLVFQYKGGS DFHVIIFDDS KLEIDYSSMI CNDEQEDKES DDDDDDGYAE ITNDCDNTKQ  420
SLKKKKINSN DSATTFATPQ VKKIHKRKIN MKATQQKISE ANGKIGGSGK KATESSKTVD  480
ANKRRCTNSH HPDENPNFTL KLSRSCVEGH KLRLTIPSWF SKEYMNELLQ GNATIRSVSD  540
EKTWHVTLSF DERNRNFKMG GGWRSFSREH NLQVGDECKF EMTEREPLSF TITIVQATKE  600
PCPEQFQENQ RVKEKSETSP AVDMDNVGNF GEGISRSCPK THDYESPNLH NKFKVSVTTL  660
DKLIIPSEFL KRHNISNGNS VELKVGEGTW FVEVSYNEDL DYGGFTKGWK EFVRECKVKI  720
GDTCFFEMID LQNHVFKVSI ILDV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11528
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630376.11e-113B3 domain-containing protein REM16
TrEMBLA0A072U9K20.0A0A072U9K2_MEDTR; B3 DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-16B3 family protein