PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11525
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 297aa    MW: 35034.9 Da    PI: 9.9273
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11525genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.93.2e-122152951798
                                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                ++p +f +++++   e++  + +  + r+Wev ++y+  ++  +l +GWk+F ++ +L+ gD++ F++++++  +++v ++r
  Tp57577_TGAC_v2_mRNA11525 215 RIPCEFSRRFMEA-YEGIAWIRRVGEDRTWEVDVKYDPEGDYSILNRGWKQFSDQYNLQIGDTCEFQMTRSKPPSFTVAIIR 295
                                5555555555322.2333444466788****************************************987777777888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-12598IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-10697IPR015300DNA-binding pseudobarrel domain
CDDcd100176.95E-7796No hitNo description
SMARTSM010190.015999IPR003340B3 DNA binding domain
CDDcd100179.77E-13197295No hitNo description
SMARTSM010190.0019199288IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308199296IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-13201295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-13201295IPR015300DNA-binding pseudobarrel domain
PfamPF023627.3E-10202295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSFYNTPKFF KFIQNHELYN GELRVPRQFV DKYWKSIPNP VVMTLPNGVQ KEIFWIKRDG  60
DVWFQKNWEK MAKFLKFGYV VFFKYMGGSC FQLEILGLNS LEIDYSNIKF IDQXXXXXXS  120
DDDIEMPKSK KSKRTRKGKG KGKGKISSNV GGMNPCFELT LTKTTAKGYL FRIPCKFSRR  180
YMGDFEGIAR IRSFGEKRIW KVTVKYDHEL DYTLRIPCEF SRRFMEAYEG IAWIRRVGED  240
RTWEVDVKYD PEGDYSILNR GWKQFSDQYN LQIGDTCEFQ MTRSKPPSFT VAIIRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11525
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z6P6I92e-97A0A2Z6P6I9_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11472624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-13B3 family protein