PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11519
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GeBP
Protein Properties Length: 364aa    MW: 42361.3 Da    PI: 4.372
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11519genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57382.56.1e-26119216297
                     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 
                                + qrlw+++De+ lL+G +d+ +++g      ++d+  fy++v  + +  ++k+qlv+K+rrLK+K k+  +k +++ ++sf+ 
  Tp57577_TGAC_v2_mRNA11519 119 QYQRLWTKQDEMELLKGYLDYIKQQGRtatTLQSDVASFYDQVMPKFNTYFNKNQLVDKLRRLKRKHKMVLDK-SKEVQVSFKI 201
                                579******************9999985544556***************************************.888899**** PP

                     DUF573  83 ehdqkifelskkiWg 97 
                                +h+q ife+s+kiWg
  Tp57577_TGAC_v2_mRNA11519 202 PHEQAIFEISHKIWG 216
                                **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-25121216IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MLKPLVSWIF SPSSSSSSSS EEEEEEEEES FDINNEESDY ENYENDNVED QLENVDNEEK  60
NNFLSTCDVD DALEASDAIP XXXXXXXXXX XXXXXXXXXT IATPSTRQRN NKYSGGVRQY  120
QRLWTKQDEM ELLKGYLDYI KQQGRTATTL QSDVASFYDQ VMPKFNTYFN KNQLVDKLRR  180
LKRKHKMVLD KSKEVQVSFK IPHEQAIFEI SHKIWGNDTD HDVFDVDESR HVSESPDLID  240
NVKMKNEYVD DCEEMDKRPH KRMRLTTDDV NTKNDQNYGD VTSIHGFIEE TMRSCFPPLL  300
KELLDDASVE PLGALPMMLS TGEARDEQWL KRRILELEVY LNRLELLQGQ IKARLEELKS  360
SLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11519
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591030.21e-169probable transcription factor At5g28040
TrEMBLA0A2K3N2Z20.0A0A2K3N2Z2_TRIPR; Uncharacterized protein
STRINGXP_004496019.11e-164(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-44DNA-binding storekeeper protein-related transcriptional regulator