PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11117
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 525aa    MW: 58486.1 Da    PI: 6.0396
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11117genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.42.2e-2255110156
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                ++k +++t++q++eLe++F+++++p++++r++L+kklgL+ +qVk+WFqNrR+++k
  Tp57577_TGAC_v2_mRNA11117  55 KKKYHRHTPQQIQELENFFKECPHPDEKQRADLSKKLGLENKQVKFWFQNRRTQMK 110
                                79999************************************************999 PP
2START1701.6e-532634871206
                                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdet 75 
                                e+a++a++el+k+ + +  +W ks+    e++n de+ ++ ++ ++     + +ea r++g++  ++a l e+++d   +W+e+
  Tp57577_TGAC_v2_mRNA11117 263 EIALAAMDELIKMTEPDTHLWIKSPdngkEMLNHDEYARIGSPFNSpkpngFVTEATRETGLLYTNSAALAEIFMDAD-RWSEM 345
                                6899************************************998777999999****************9999999999.***** PP

                                -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EES CS
                      START  76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaell 148
                                ++     a+tl+v+++g      g  q+m ae q++sp vp R + f+R+++q+ +g+w++vd S+d  ++ p+  +++ +++l
  Tp57577_TGAC_v2_mRNA11117 346 FPcmiaHAATLDVLTNGmggtrnGSMQVMHAEIQLPSPFVPvRQYRFLRFCKQHAEGVWAVVDASIDFGRNGPNGNPYMSSKKL 429
                                ************************************************************************************ PP

                                SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                      START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                pSg++++++sng +k+t+v+h  ++++ +h+++r++v+sg+a+ga +wvatlqr+ce+
  Tp57577_TGAC_v2_mRNA11117 430 PSGCILQDMSNGFCKITYVDHSQYDESAVHQIFRPMVNSGIAFGAHRWVATLQRHCES 487
                                ********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-2234110IPR009057Homeodomain-like
SuperFamilySSF466897.52E-2141112IPR009057Homeodomain-like
PROSITE profilePS5007118.17252112IPR001356Homeobox domain
SMARTSM003892.7E-1954116IPR001356Homeobox domain
CDDcd000863.53E-2055112No hitNo description
PfamPF000466.5E-2055110IPR001356Homeobox domain
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PROSITE profilePS5084843.642254490IPR002913START domain
CDDcd088757.71E-113258486No hitNo description
SuperFamilySSF559611.18E-30259488No hitNo description
PfamPF018524.0E-45263487IPR002913START domain
SMARTSM002344.0E-39263487IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MEANGEMGLI GENFDSGLMG RMRDDDFESR SGSENFDASG DEFDAGDDHQ QNKRKKKYHR  60
HTPQQIQELE NFFKECPHPD EKQRADLSKK LGLENKQVKF WFQNRRTQMK TQLERHENMI  120
LRQENEKLRA ENSVMKEAMA NPICSNCGGP AIPGQISMEE HQIRIENARL KEELARVCTL  180
SNKFLGRPVS ALTGMSMQNP NAGFEFGIGR NGIVGPSNFN MSLPMGFDMG DGVMGAPPSN  240
SVMRSPMGMI GNDAQQERAV LIEIALAAMD ELIKMTEPDT HLWIKSPDNG KEMLNHDEYA  300
RIGSPFNSPK PNGFVTEATR ETGLLYTNSA ALAEIFMDAD RWSEMFPCMI AHAATLDVLT  360
NGMGGTRNGS MQVMHAEIQL PSPFVPVRQY RFLRFCKQHA EGVWAVVDAS IDFGRNGPNG  420
NPYMSSKKLP SGCILQDMSN GFCKITYVDH SQYDESAVHQ IFRPMVNSGI AFGAHRWVAT  480
LQRHCESLAI LMSPVSSDES AGMHATFHEP TGQEKHVKAR AADD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11117
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515730.10.0homeobox-leucine zipper protein ROC6-like isoform X1
RefseqXP_027186734.10.0homeobox-leucine zipper protein ROC6-like isoform X1
RefseqXP_027186735.10.0homeobox-leucine zipper protein ROC6-like isoform X1
RefseqXP_027186736.10.0homeobox-leucine zipper protein ROC6-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A2K3MRE10.0A0A2K3MRE1_TRIPR; Homeobox-leucine zipper protein anthocyaninless 2-like (Fragment)
STRINGXP_004515730.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2174024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]