PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11046
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 927aa    MW: 103860 Da    PI: 6.9816
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11046genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-06481503326
                                S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                +++C ff+  G+C+ G+rC+F Hg
  Tp57577_TGAC_v2_mRNA11046 481 MVPCYFFFN-GFCNKGNRCSFLHG 503
                                689******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF633801.24E-26118234IPR017938Riboflavin synthase-like beta-barrel
Gene3DG3DSA:2.40.30.102.2E-31119219No hitNo description
PROSITE profilePS5138413.645124232IPR017927Ferredoxin reductase-type FAD-binding domain
CDDcd061833.82E-79129339No hitNo description
PfamPF009703.5E-23129231IPR008333Oxidoreductase, FAD-binding domain
PRINTSPR004065.8E-17181188IPR001834NADH:cytochrome b5 reductase (CBR)
PRINTSPR004065.8E-17217231IPR001834NADH:cytochrome b5 reductase (CBR)
Gene3DG3DSA:3.40.50.803.3E-18220268No hitNo description
SuperFamilySSF523435.24E-23220313No hitNo description
PRINTSPR004065.8E-17240259IPR001834NADH:cytochrome b5 reductase (CBR)
PfamPF001756.5E-7268313IPR001433Oxidoreductase FAD/NAD(P)-binding
Gene3DG3DSA:3.40.50.802.7E-11269337No hitNo description
PRINTSPR004065.8E-17336344IPR001834NADH:cytochrome b5 reductase (CBR)
PROSITE profilePS5010310.286401430IPR000571Zinc finger, CCCH-type
SMARTSM003560.0068402429IPR000571Zinc finger, CCCH-type
PfamPF156633.9E-11402456No hitNo description
PROSITE profilePS5010310.568432458IPR000571Zinc finger, CCCH-type
SMARTSM003560.4434457IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5478503IPR000571Zinc finger, CCCH-type
SMARTSM003560.014478504IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455478505IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4483504IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0055114Biological Processoxidation-reduction process
GO:0005739Cellular Componentmitochondrion
GO:0005794Cellular ComponentGolgi apparatus
GO:0009505Cellular Componentplant-type cell wall
GO:0005507Molecular Functioncopper ion binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    Send to blast
MSSFFQPSMA VEHGSDVKVD IDLSLFYFSK TTKVSTINFL ISYVTTMLVP FKFSEKLRFA  60
NSTPIAFAAQ SKSSRTNFQL PFTAIAAISG GFSYLYYSSS PNLVHSDQIA EEDIKPQNIA  120
LVPDKWVEFK LQDTARVSQN TNLYRFSFDP TKKLGLDVAS CIVTRAPLGQ DAEGKPKYVV  180
RPYTPISDPE SKGYFDLLIK VYPEGKMSQH FASLKPGDVV EVKGPIEKFR YTPNMKKSIG  240
MIAGGSGITP MLQVIEAILK NSDDKTQVDN PTKNWKGGVG YISKDMVVKG LPAPSDDTLV  300
LVCGPPGMMK HISGEKAKDW TQGEVSGILK EAGYTEQMVC GPPGMMKHIS GEKAKDWTQG  360
EVSGILKEAG YTEQMIDQIL IAFSSNPFSI YERTNMDEDL LKRNTDCVYF LASPLTCKKG  420
AECEYRHHEI ARLNPRDCWY WLSGNCLNPT CAFRHPPLDG HTGVPSEPAQ SSLPATANKT  480
MVPCYFFFNG FCNKGNRCSF LHGNDASLLA VKPLKNDNVK PLKNDNGNIN ALNNLENKTS  540
SGNKTVASKP SETHFDQPLS SPKALSDIKL QPKEDLQLPL PKNVKQKDDC LELSAFDHKE  600
APLTRSDSPS PDDSFAHNMS HSSTEQSSEE QQDSHVEPEE RWESSPGFDV LVHDESGNLG  660
YENDSEYLPV LDMDDHELNE QYLGYELKNT DEYNTMCSDA DILYEQGTCD DYRCFDRDFT  720
SASERKVCGY SREIVLDSIF SRKRVRMSAA EMAAYDSDLD LRDHLRRRRG VNGPPVTGFV  780
RRHESSSLMV RNRERHQRQG IGQQQNIRLT TQLGFGSIRE VEDLSIANKQ RLFRPSQQNR  840
PRNLYREKPA KQPFHSSKKK VSRKPVVKQQ NFIQESGTFS GPKTLAEIKE EKMKKAGQSS  900
QCESSSAGFQ DPKPLHEILK DRRTVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2eix_A3e-451203155229NADH-cytochrome b5 reductase
2eix_B3e-451203155229NADH-cytochrome b5 reductase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11046
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1579830.0AC157983.16 Medicago truncatula chromosome 8 clone mth2-130n5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004508520.10.0zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A2K3PE160.0A0A2K3PE16_TRIPR; Zinc finger CCCH domain-containing protein 17-like
STRINGXP_004508520.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1116122