PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10973
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 289aa    MW: 31629.8 Da    PI: 8.4147
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10973genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073223245223
                                EETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                +Cp C+  Fs+   L+ H ++ H
  Tp57577_TGAC_v2_mRNA10973 223 QCPQCDAKFSSVTALVDHVQKvH 245
                                7******************9988 PP
2zf-C2H216.62.2e-05261282323
                                ETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                                Cp+C+k F+++ +L+ H  + H
  Tp57577_TGAC_v2_mRNA10973 261 CPKCSKGFRDPVSLVEHVEReH 282
                                *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.01E-12459No hitNo description
PROSITE profilePS510397.6931056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.7E-101153IPR000058Zinc finger, AN1-type
PfamPF014285.6E-131351IPR000058Zinc finger, AN1-type
SMARTSM001540.0041352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.5E-1091149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.62E-893146No hitNo description
PROSITE profilePS510397.78698145IPR000058Zinc finger, AN1-type
PfamPF014281.1E-7101141IPR000058Zinc finger, AN1-type
SMARTSM001540.17101142IPR000058Zinc finger, AN1-type
SMARTSM003550.005222245IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642222250IPR007087Zinc finger, C2H2
SuperFamilySSF576676.55E-5223278No hitNo description
PfamPF138945.3E-4223245No hitNo description
PROSITE patternPS000280224245IPR007087Zinc finger, C2H2
SMARTSM003555.6259282IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369259287IPR007087Zinc finger, C2H2
PROSITE patternPS000280261282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGTPEFPDLG KHCAFSDCKL IDFLPFTCDR CNQVYCLEHR SYIKHHCTKA DKQDVTVVIC  60
PLCAKGVRLV PEQDPNITWE NHVNTDCDPS NYEKVTKKKK CPAAGCKEIL VFSNTIKCRD  120
CMVDHCLKHR FGPDHKCPGP KKLESNFSFM SLMNRNRKPE SKKTNSSSTP SSSKWTKSFL  180
NAASSIRASA EAGISKLSGE INQAWGTSSD GGGKSNSSGQ VEQCPQCDAK FSSVTALVDH  240
VQKVHERSGN RSAAKVTIDA CPKCSKGFRD PVSLVEHVER EHGGSSSA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10973
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0525700.0BT052570.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-B-14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027366855.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 isoform X1
SwissprotQ0D5B91e-125SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A2Z6N5061e-180A0A2Z6N506_TRISU; Uncharacterized protein
STRINGXP_004513765.11e-180(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]