PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10912
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 280aa    MW: 31429.1 Da    PI: 8.9438
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10912genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.47.1e-09177200528
                                CHHHCHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   5 krerrkqkNReAArrsRqRKkaei 28 
                                +r +r++kNRe+A rsR+RK+++i
  Tp57577_TGAC_v2_mRNA10912 177 RRNKRMIKNRESAARSRARKQEKI 200
                                699*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0078173273IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-9175198No hitNo description
SuperFamilySSF579597.03E-6177205No hitNo description
CDDcd147075.72E-20177259No hitNo description
PROSITE patternPS000360180195IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-9234259No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEEVWKDINL SSLNDQNTRP MLNTRSTFGG GVILQDFLTR PLNIDPPKSL DYSSNNSSSS  60
VASDQNNTNN GSFYCSAPPP PPPPLVTALS LNSHLDFHFD PLIRQTKNNN SQILLHEQQQ  120
QQQLQQQQHN VAPVSNISAC FVNPSPSSYE QNVGVGSNSF ACFGKRFGEP EISPGERRNK  180
RMIKNRESAA RSRARKQEKI APFFHSINLV IVRGQTGLIF SDCYSKYCTI YGAYTTELEQ  240
KVQLLQEENA RLKRQQKELF EAEIGVQQKK NSLSRTSSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10912
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640475.11e-81protein FD
TrEMBLA0A2K3MW861e-109A0A2K3MW86_TRIPR; Protein FD-like
STRINGAES951901e-105(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37553252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.14e-18bZIP family protein