PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10527
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 341aa    MW: 39193.6 Da    PI: 10.0848
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10527genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.41.6e-101474166
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHH CS
                         B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWk 66
                               ffk+ ++  +l +g l++p kf+e++g  +  + t+ +++++g +We++l   k++g+++++kGW+
  Tp57577_TGAC_v2_mRNA10527 14 FFKIILTQ-TLHQGKLMIPVKFVEKYG--EGLPNTIYFKTPNGAKWELNL--VKSDGKIWFEKGWN 74
                               56666554.455567***********8..45889****************..*************6 PP
2B364.81.3e-201272138100
                                -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                         B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                                  +l +g l++pkkf+e++g  +  +k + l++++g++W+++l   k++g+++++kGWkeFv+ + L  g  vvFk++++s f 
  Tp57577_TGAC_v2_mRNA10527 127 DQNLHEGKLMMPKKFVEKYG--EGLTKIICLKTPNGEKWKINL--VKSDGKIWFEKGWKEFVEYHSLAHGHLVVFKYEKNSHF- 205
                                45566778***********8..447889***************..********************************999999. PP

                                .EEEEE-SS CS
                         B3  92 lvvkvfrks 100
                                  v++f+ks
  Tp57577_TGAC_v2_mRNA10527 206 -EVQIFDKS 213
                                .9***9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-131074IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-121174IPR015300DNA-binding pseudobarrel domain
CDDcd100173.08E-81273No hitNo description
PROSITE profilePS508637.1191374IPR003340B3 DNA binding domain
PfamPF023621.2E-71474IPR003340B3 DNA binding domain
SMARTSM010194.0E-414105IPR003340B3 DNA binding domain
SuperFamilySSF1019367.46E-26115213IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-26117213IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.776120213IPR003340B3 DNA binding domain
CDDcd100171.16E-18120211No hitNo description
SMARTSM010191.0E-19121213IPR003340B3 DNA binding domain
PfamPF023626.3E-18127212IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMASEFPEVK QFHFFKIILT QTLHQGKLMI PVKFVEKYGE GLPNTIYFKT PNGAKWELNL  60
VKSDGKIWFE KGWNLEGICK ISFSSSWPSS PFRQYAYVLV LNKREHSIMA NESPHVKPTH  120
FFKIICDQNL HEGKLMMPKK FVEKYGEGLT KIICLKTPNG EKWKINLVKS DGKIWFEKGW  180
KEFVEYHSLA HGHLVVFKYE KNSHFEVQIF DKSAFEIKYP LKRFDAKRVY NGQKRKANLE  240
FHQPCEIGSS SGVKVEKLQK VAAMNHIDKK CEGEQFVIAK KVKALDRATS FRTCNPSFHV  300
VMNPSYMHGP CNLLVKADSA FNNVFSIARS EKALPKSSAS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10527
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515218e-44AC151521.2 Medicago truncatula chromosome 7 clone mte1-49d11, complete sequence.
GenBankAC1691808e-44AC169180.3 Medicago truncatula chromosome 7 BAC clone mth2-5f24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622663.11e-89B3 domain-containing transcription factor VRN1
TrEMBLA2Q2N64e-95A2Q2N6_MEDTR; Putative transcription factor B3-Domain family
STRINGAES788947e-95(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.14e-25B3 family protein