PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10516
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 84aa    MW: 9817.37 Da    PI: 9.071
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10516genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.48.1e-1112781779
                               E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-E CS
                         B3 17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDf 79
                                +p +f ++h  +++++++ ++ l+ ++g++W  k+ +r  sg     + ++GWkeF+k+ +Lk+g+ 
  Tp57577_TGAC_v2_mRNA10516 12 HIPSEFGKRHllDLDNKQG-DIHLRLLNGKVWPAKYLIRIVSGVeryEMYSSGWKEFAKDTNLKVGEA 78
                               69*********96665454.9999999*********7744443334467899**************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.602183IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-11977IPR015300DNA-binding pseudobarrel domain
CDDcd100174.25E-101077No hitNo description
PfamPF023621.2E-81277IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-101277IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MNICIFFVAW QHIPSEFGKR HLLDLDNKQG DIHLRLLNGK VWPAKYLIRI VSGVERYEMY  60
SSGWKEFAKD TNLKVGEARI YDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10516
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634792.12e-19B3 domain-containing transcription factor VRN1
TrEMBLA2Q2N51e-25A2Q2N5_MEDTR; Transcriptional factor B3
TrEMBLG7KVW78e-24G7KVW7_MEDTR; Transcriptional factor B3 family protein
STRINGAES788942e-24(Medicago truncatula)