PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10320
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 754aa    MW: 85962.3 Da    PI: 6.3165
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10320genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.72.2e-19123214290
                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 
                                f  +Y+k+ GFsvrks   ks  +ge  ++tf Cs  g++e++  + +++++r+r etr+gC ak++v+ +    +g+w+vt +
  Tp57577_TGAC_v2_mRNA10320 123 FCTTYSKMNGFSVRKSDVVKS-SKGELLQQTFICSSAGYTENKGLNvDNRKQRERRETRCGCAAKFRVHINIasaSGRWYVTLF 205
                                7789***************99.7778****************999977888999**********998887655589******** PP

                       FAR1  82 eleHnHela 90 
                                  eHnHe++
  Tp57577_TGAC_v2_mRNA10320 206 TDEHNHEMV 214
                                *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-17123214IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.557479527IPR007527Zinc finger, SWIM-type
PfamPF044347.6E-4502523IPR007527Zinc finger, SWIM-type
SMARTSM005750.0037502529IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MSINEQVEET TYYSEGSCEV ELEGSCEDSD GGENEDNNCQ EDPEHINEDV DESEDGDDSS  60
EENFLEQNSE IGDDNCGDYV DSCEEEEIVI DDLDDILKID MKNIVSNDVS RYYFSNLEVA  120
YQFCTTYSKM NGFSVRKSDV VKSSKGELLQ QTFICSSAGY TENKGLNVDN RKQRERRETR  180
CGCAAKFRVH INIASASGRW YVTLFTDEHN HEMVKDIYCQ MLPGHKKITE VDALVIHNHA  240
KVGIRPSTTY GAFAHASGGY NKVQFMKKDL YNQVGKQKRQ QVSDASAAVM GGKAPSSVIT  300
DGDLAMKNAI RNVNVLEFHS YFKKCMFGDY SVGKFDEIWR QIITKCGLEN NNWVQDLYQK  360
RKMWATALMR GKLFAGIRTT SRCEALHCHI GKFVHSRISL NDFVQQFQRC LTYFRFREVE  420
ADFESNYGEM VLQTTLRSIE RSASRKFTNS IFYQFRDVLK KSSLTRVLDS YEMSTYSIYL  480
VSKYCGSGKV WHVSCCLSPI ELKCSCLKME SVGFPCEHIV TVLVFLDFDE LPDCLVMSRW  540
SKKAKDAIRG SYTDGSFYWD SQLVAKQANL HFLXXXXXXX XXXXXXXXXX XXXXXXXXXX  600
XXXXXXXXXX XXXXXXXXXX LVAKQANLHF LCKEIVEVAH RDNGDYNYLV QLLTRELNNL  660
KLKHRDVTVG ENVESETVDE VIYDPEIIRT KGCGPSTTSG TGKTKRSYKG CGAVKHRCDV  720
PGHNRRSCPK LKNKTNNMAL LWSGVSHLMA LFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170177RKQRERRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.12e-31FAR1-related sequence 12