PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10278
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 276aa    MW: 31737.7 Da    PI: 6.5116
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10278genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC140.83.4e-44751762100
                      NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 
                                l +fw+ q   i ++ dfk h++Pl rikki+kade+v++isa+aP+l++kace+fi+elt+rsw +a+ n+rrtl+k dia+a
  Tp57577_TGAC_v2_mRNA10278  75 LATFWAIQndeIRETMDFKTHRIPLLRIKKIMKADEQVNKISADAPILFAKACEMFIMELTIRSWANADFNRRRTLHKGDIASA 158
                                7789*9887778999********************************************************************* PP

                      NF-YC  83 vtrtdifdflvdivprde 100
                                +++td+fdflvdivp+++
  Tp57577_TGAC_v2_mRNA10278 159 ISNTDVFDFLVDIVPKED 176
                                ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.01E-2471168IPR009072Histone-fold
PfamPF008089.5E-1896159IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.5E-3198174IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDQKNQEQPR EQENHAPTGT QVNGENQNHS NQIMQLPHPL IHSAGASTFS SYLSRDPFQH  60
FPHKYFNQQN LQTKLATFWA IQNDEIRETM DFKTHRIPLL RIKKIMKADE QVNKISADAP  120
ILFAKACEMF IMELTIRSWA NADFNRRRTL HKGDIASAIS NTDVFDFLVD IVPKEDTMEH  180
DIFKDIPRSE CVPLRNVNVP YYVPVSLQPQ YVPMQPQYAA GPSYSYGPQG MLMGGHVLNQ  240
PYYNMQQLPQ PFANQRFAIQ KQENDESNDL RGSEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-3982174395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10278
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462829.16e-88nuclear transcription factor Y subunit C-2
TrEMBLA0A2K3M3C40.0A0A2K3M3C4_TRIPR; Nuclear transcription factor Y subunit C-9-like protein
STRINGXP_004486310.11e-54(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.24e-48nuclear factor Y, subunit C4