PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10143
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 825aa    MW: 93325.5 Da    PI: 9.1038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10143genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-056385123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               + C+ C+k F r  nL+ H r H
  Tp57577_TGAC_v2_mRNA10143 63 FICEVCNKGFQREQNLQLHRRGH 85
                               89*******************88 PP
2zf-C2H2120.00066139161123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC++C+k +  +s+ k H +t+
  Tp57577_TGAC_v2_mRNA10143 139 WKCEKCSKKYAVQSDWKAHSKTC 161
                                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.7E-66285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.44E-76285No hitNo description
PROSITE profilePS5015710.996385IPR007087Zinc finger, C2H2
PfamPF121714.3E-56385IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00526385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM00355130104134IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-5127160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.44E-7134159No hitNo description
SMARTSM00355140139159IPR015880Zinc finger, C2H2-like
PfamPF139662.8E-9568639IPR026960Reverse transcriptase zinc-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MAAASSSTSF FGIREENQSQ ITTSSDPSST IPPKKRRNQP GTPKPDAEVI ALSPKTLMAT  60
NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKSNKDPK RKVYLCPEPT CVHHDPSRAL  120
GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYRCDC GTLFSRRDSF  180
ITHRAFCDAL AQENALRHPN PFGSTHHLYS TTNTSHHMNL GQISHQLQNH QNQTNNNILR  240
LGSSSSAPKF EQQLITSQQP LNHHSSFATF FMSDIPNQSS SFEEHQFTNK QLHGLMQLPN  300
LQGNNTNNNV FNLMNNIQDH QQFNNPLIND HHHQSMFDQN MSSDPHMSAT TLLQKASQIG  360
STNSTNNKGN TNINTSFGNR SSSMGNDDDD NNDELHGLIN SIANGNTSSS IFGGSDKLTL  420
DFLGVGAMVR NMNSGAGFSQ HAMNTTSMAS LNHDLKSVQS SSVVWNSIIK ARNALRSGYE  480
YRLGNGSSSF WYEHWSNHGR LCDQVLYVDI HDIQLTVADV AQQGSWNLSQ LYTQLPPNIL  540
EAISKISVCL HENIPDGYTW KGNLDGIYSA KAGYSWVKKS NSMAGIDELP SWKWLWRIPA  600
PEKFKFFCWT ACHNSLPTRT MLHKRGSMKI ALFPYPHCSQ PSLPKISKIL LIIHTLRHKL  660
VDTIMGRYFL IDIYGVTCAI TDAKPDEAEV DPKLVEQWKN ANKVDFLRLQ FFKEFVILVD  720
LCLDFLVPRH LPPSEIVSTN KLLFGSILNS VFVVHVIPNF FRNLFGINFN FIGFSSGLTL  780
GRPDLDSRNS LEASPWIMKF PLALVTHIQY YTFYTESCYY IKNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-35135195363Zinc finger protein JACKDAW
5b3h_F9e-35135195363Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10143
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064231e-128AP006423.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23C14, TM0311, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469433.10.0protein indeterminate-domain 4, chloroplastic isoform X1
RefseqXP_024640939.10.0protein indeterminate-domain 4, chloroplastic isoform X1
STRINGXP_004496222.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-95indeterminate(ID)-domain 4