PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA10138

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 538aa MW: 61520.6 Da PI: 9.763

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA10138	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.1	2.3e-21	21	108	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +f+ +Y+k+ GF vrk++ +k+k +g it+ +fvC keg+++++k++ +++raetr gC+a++ ++++ +gk++++++++ Tp57577_TGAC_v2_mRNA10138 21 QFWVQYGKKYGFGVRKHYLNKRKADGLITSCKFVCCKEGSKSKDKRS-FLVKKPRAETRSGCDASISLTLK-NGKFVIQDFVET 102 69***************************************9999.9999***************.******** PP FAR1 85 HnHela 90 HnH l+ Tp57577_TGAC_v2_mRNA10138 103 HNHLLQ 108 *885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-18	21	107	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-28	230	324	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MTINMIPSVG MQFDGVDVAW QFWVQYGKKY GFGVRKHYLN KRKADGLITS CKFVCCKEGS 60 KSKDKRSFLV KKPRAETRSG CDASISLTLK NGKFVIQDFV ETHNHLLQYT ETTHMLASHR 120 KISEVQAYEI EMAQDSGLKQ KASFQLMRTH AGGRANLGFT RLDAKNYLQT KRQHDMVHGD 180 LGSLMQYFQR QMLDNPSFYH AYQMDCDEQI TNIFWADAKM ILDYGYFGDV VSLDTTYCTN 240 RANRPLALFS GFNHYRGTLI FGAALLYDET AESFKWLFET FLKAHGSKKP QTMFTDQAPA 300 MAKALANVMP ETRHGLCTWH LMQNGIKNLT TLMKGGSHFL SDFKKCMYEY DQEAKFEAAW 360 SKLVTEYDVS NRSWVKLMYG IKQKWAACHM KKAFTLGMLA ADVSISESLH KLVEKGVYDL 420 CKLVMEVRLH ETGKINDKSD VPIVTEEYKT QASGIKIRPG FTSRRKRLKS WVERMPKKRS 480 RATTVKSKPS QRSKDIQSPS QMERETSTLA QSTCEFSQKN ENNFSFTGLL MEQSNNG*

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MTINMIPSVG MQFDGVDVAW QFWVQYGKKY GFGVRKHYLN KRKADGLITS CKFVCCKEGS  60
KSKDKRSFLV KKPRAETRSG CDASISLTLK NGKFVIQDFV ETHNHLLQYT ETTHMLASHR  120
KISEVQAYEI EMAQDSGLKQ KASFQLMRTH AGGRANLGFT RLDAKNYLQT KRQHDMVHGD  180
LGSLMQYFQR QMLDNPSFYH AYQMDCDEQI TNIFWADAKM ILDYGYFGDV VSLDTTYCTN  240
RANRPLALFS GFNHYRGTLI FGAALLYDET AESFKWLFET FLKAHGSKKP QTMFTDQAPA  300
MAKALANVMP ETRHGLCTWH LMQNGIKNLT TLMKGGSHFL SDFKKCMYEY DQEAKFEAAW  360
SKLVTEYDVS NRSWVKLMYG IKQKWAACHM KKAFTLGMLA ADVSISESLH KLVEKGVYDL  420
CKLVMEVRLH ETGKINDKSD VPIVTEEYKT QASGIKIRPG FTSRRKRLKS WVERMPKKRS  480
RATTVKSKPS QRSKDIQSPS QMERETSTLA QSTCEFSQKN ENNFSFTGLL MEQSNNG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA10138

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024632639.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2Z6MT37	0.0	A0A2Z6MT37_TRISU; Uncharacterized protein
STRING	XP_004490690.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-82	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA10138