PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g29200
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB_related
Protein Properties Length: 443aa    MW: 50218.2 Da    PI: 9.8396
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g29200genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09132174346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eE ++l ++++++  + ++ Ia ++++ Rtl+++k+r+++
        Tp4g29200 132 VWTKEETDQLFELCERFDLR-FTVIADRFPLLRTLEELKDRYYS 174
                      6*******************.*********99**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162828.7E-30105179IPR032563DAMP1, SANT/Myb-like domain
SMARTSM007171.3E-8129178IPR001005SANT/Myb domain
SuperFamilySSF466893.83E-6129181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-6132177IPR009057Homeodomain-like
CDDcd116584.01E-17133175No hitNo description
PfamPF054992.9E-6321391IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0000812Cellular ComponentSwr1 complex
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGGTDAKDIL GLPKTPLSLT QEKKSRPQKE SHRKPDGISR EVYALTGGVA PLMPSIDVTH  60
LKRRPPADEK VAWQWLPFKS SARKDDLQLY HWVRVVNDVP PTGDYTFAKY NKSVDILRYT  120
DDEYENHLTD PVWTKEETDQ LFELCERFDL RFTVIADRFP LLRTLEELKD RYYSVTRALL  180
RARAQSPADV ANHPLMKEPY DITRDRERKR ALSMVLSQSR HQEKKDAEIL AEAKRITEMR  240
LATRRVEPDV SANENIGLDK ADGIVSGRSV SPSSNSQLPA TAVAPSTLTM ADYASTLASL  300
RMLHVYLRTY GLEQMVQAAS SAVGLRTIKR VEQTLQDLGV NLKPKVPTKT VCDEHLELRK  360
EILTLLNLQK QLQYKESEGS SHREGSHAAM PDTPKDRVFA TDPFSFGAER PIKKEQKRKG  420
PGRQADTPSP AHKRPRKMKA SDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A3e-18104184488DNA methyltransferase 1-associated protein 1
4iej_A3e-18104184488DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g29200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530190.0AK353019.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-J15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296560.20.0SWR1-complex protein 4
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLE4MWX20.0E4MWX2_EUTHA; mRNA, clone: RTFL01-19-J15
TrEMBLV4N2E90.0V4N2E9_EUTSA; Uncharacterized protein
STRINGCagra.6400s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85432435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]