PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g27950
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family BES1
Protein Properties Length: 685aa    MW: 76665.5 Da    PI: 6.5104
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g27950genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822155.73.4e-48622121142
     DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl..eeaeaagssas..aspess 93 
                ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g+kp+  ++a +agssas  as++ss
  Tp4g27950  62 GGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsksQGTKPPggSSAVVAGSSAShmASQQSS 161
                689******************************************************************9888999999988888888887766788888 PP

     DUF822  94 lq..sslkssalaspvesysaspksssfpspssldsislasaasllpvlsv 142
                     +++ss  +sp+e  s+++k +  p  s +d  +++s++ + +v++ 
  Tp4g27950 162 PPalRVVSSSGHRSPTELNSCRMKGVFAPTTSPYDLPPMQSSELVGSVSKA 212
                777566788999**************************9998444444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.9E-4063196IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.87E-170240683IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.805.8E-184243682IPR013781Glycoside hydrolase, catalytic domain
PfamPF013736.8E-94249669IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.9E-63280294IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.9E-63301319IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.9E-63323344IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060327335IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR007506.9E-63416438IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.9E-63489508IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.9E-63523539IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.9E-63540551IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.9E-63558581IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.9E-63598620IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MATDMQKLLG TSEEDDDEEM DTDVKEEDDR DQRNRGTRAA SGSSNDEFMF QQSMQDQVDT  60
PGGSRRSRPL EEKERTKLRE RHRRAITARI LGGLRRHGNY NLRVRADIND VIAALAREAG  120
WVVLPDGTTF PSKSQGTKPP GGSSAVVAGS SASHMASQQS SPPALRVVSS SGHRSPTELN  180
SCRMKGVFAP TTSPYDLPPM QSSELVGSVS KADVLVGCSV NVINSKQILE IPPNLTEQDF  240
SGTPYVPVYV MLPLGVINMK CELADRDGLL KHLRILKSIH VDGVKVDCWW GIAECHSPQE  300
YNWNGYRQLF QIVRDLNLKI QVLMSFHECG GNVGDDVCIP LPHWVAEIGR TNPDIYFTDR  360
EGRRNPECLS WGIDKERVLR GRTALEVYFD YMRSFRIELA EFLEDGVISV VEIGLGPCGE  420
LRYPSCPIKH GWRYPGVGEF QCYDKYLLKS LRKAAESRGH LFWARGPDNA GSYNSQPQGT  480
AFFCDGGDYD GLYGRFFLKW YSQVLIDHAD KILSLAKLVF DSSCISAKLP DVHWWYRTAS  540
HAAELTAGFY NPRNRDGYAA IASTLKKHGA TLSFVSGEVQ VLNRPDDFVG ALGEPEAVAW  600
QVLNAAWDAD TLIARENSLP CQDRVGYNKM LESVKFPNDP DRRHLSSFAY SRLLPALMEG  660
HNIVEFERFV KKLHGQAVMD HHQQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-13724567511443Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g27950
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273230.0AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397762.10.0beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLV4KMT30.0V4KMT3_EUTSA; Beta-amylase
STRINGXP_006397762.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29452535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]