PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g26780
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 386aa    MW: 42253.9 Da    PI: 9.3266
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g26780genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.92.1e-2171162187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                +W+ +e+ +Li+a+r+++ +l+rg+lk+++Weev++++     +   +++++qC++k+e+l+kry+ + +++++   ++  s++++f+++ea
  Tp4g26780  71 CWSPEETITLIDAYRDKWYALNRGNLKANHWEEVAIAVaancPDATPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFISSWVHFNRMEA 162
                7*********************************99997777788889**************************977999**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-2070163No hitNo description
PROSITE profilePS500906.16872132IPR017877Myb-like domain
SMARTSM005959.4E-1579168IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSDPDSPLAL DPVPDPSPVP DQSSPPLALL PPPLCSSAPD DASAELASAT DQKIASIPAT  60
SKSSRRLPPP CWSPEETITL IDAYRDKWYA LNRGNLKANH WEEVAIAVAA NCPDATPKKT  120
AVQCRHKMEK LRKRYRTEIQ RARSVPVARF ISSWVHFNRM EAMENRPEAK PGNESGGEDN  180
DDGNYAARYQ FSGGSTTPRF FNVNGIARSG GSSSSGGIRI RIPTGVSIAQ PGPRFPGKID  240
PKYTASPSSG ISTNPRPGRL GAGSNYGARV VRTLEGGEER ACNSTTTGKR GREMIMMMAE  300
EPDDPIGEIA SAIKLLGDTL LRTEQTKMEM TREIEAMRME MEMKTTKMIL ESQQQIVEAF  360
AKTMSKNLEE KKKKKARRIF SLSVDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g26780
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397652.10.0trihelix transcription factor ASIL2
TrEMBLV4KMI10.0V4KMI1_EUTSA; Uncharacterized protein
STRINGXP_006397652.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-133Trihelix family protein