PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g24800

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

G2-like

Protein Properties

Length: 273aa MW: 30496.4 Da PI: 9.8442

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g24800	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.8	1.8e-31	54	107	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+ Tp4g24800 54 PRLRWTPDLHLSFVRAVQRLGGPHRATPKLVLQMMNLKGLSIAHVKSHLQMYRS 107 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-28	50	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.821	50	110	IPR017930	Myb domain
SuperFamily	SSF46689	8.06E-14	54	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-22	54	109	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-9	55	106	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDGTSSPEKC STWLDLNREE AVEKNNEEES SVEDEDQQVM SSNNVRQYVR SNMPRLRWTP 60 DLHLSFVRAV QRLGGPHRAT PKLVLQMMNL KGLSIAHVKS HLQMYRSKKL ETSSFHEVGA 120 MMGGQRSYLL DMINIPYGDI RHVYNSKTVP SRVHNQGGVF ANVVGGNFVM RPSSWCNGLT 180 GNEKCGVRGV LDRDSIESKT LPLLEIRRTT NEKRVRGEQA REVSSVKRSK PMSGGGNQLP 240 ESGNCRQKQT EGINTMLSLS LFSTSSGDRS NGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	55	109	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g24800

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411533.1	1e-148	uncharacterized protein LOC18026464
TrEMBL	V4P139	1e-146	V4P139_EUTSA; Uncharacterized protein
STRING	XP_006411533.1	1e-147	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	1e-107	G2-like family protein