PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g23930
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 241aa    MW: 27982.2 Da    PI: 5.8893
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g23930genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.26.4e-34381292102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y+++ed++++++isw+ +g+ fvv+++ efa+++Lp+ Fkh nf+SFvRQLn+YgF+kv++ +         weF+++ F+kg++el+++i+
     Tp4g23930  38 FLVKTYKVVEDPTTDDVISWNGDGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIR---------WEFSNEMFRKGHRELMCNIR 125
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ks
     Tp4g23930 126 RRKS 129
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.0E-3630122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-5534127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.63E-3335127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.2E-183861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3038127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-1889101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEDAAHHLHN DEERLPLEFM IGKQTSTVEL QPPLPPPFLV KTYKVVEDPT TDDVISWNGD  60
GTGFVVWQPA EFARDLLPTL FKHCNFSSFV RQLNTYGFRK VTTIRWEFSN EMFRKGHREL  120
MCNIRRRKSW SHSHSHSTSH QVVPTTTAKQ EDHQRLGIDH HHEDQRSSST SSSSVYSALL  180
DENKCLKNEN EFLSSELGKT KKKCKQLMEL MERYRGEDEA EETDDDDNDD EGLKLFGVKL  240
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-213612718120Heat shock factor protein 1
5hdg_A7e-21361278110Heat shock factor protein 1
5hdn_A7e-21361278110Heat shock factor protein 1
5hdn_B7e-21361278110Heat shock factor protein 1
5hdn_C7e-21361278110Heat shock factor protein 1
5hdn_D7e-21361278110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g23930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181700.11e-133heat shock transcription factor B3
SwissprotO222301e-134HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A178VUP71e-133A0A178VUP7_ARATH; HSFB3
STRINGAT2G41690.11e-133(Arabidopsis thaliana)
STRINGXP_006294789.11e-132(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-123heat shock transcription factor B3