PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g22590
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family G2-like
Protein Properties Length: 414aa    MW: 46809.4 Da    PI: 7.3339
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g22590genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.4e-3287140255
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                prlrWtpeLH +F++ave+LGG+++AtPk +l+lm+vkgL+++hvkSHLQ+YR+
  Tp4g22590  87 PRLRWTPELHLCFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYRS 140
                8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-3083141IPR009057Homeodomain-like
PROSITE profilePS5129413.32183143IPR017930Myb domain
SuperFamilySSF466893.94E-1684142IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-2487142IPR006447Myb domain, plants
PfamPF002491.0E-988139IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MRSSSQSSEN SKTCPSNNFK ETNKKEDNKD EEDDEEEEED EEERSADQSP SNNSYVEESG  60
SHHHQHNNDQ IKKNGGSVRP YNRSKTPRLR WTPELHLCFL QAVERLGGPD RATPKLVLQL  120
MNVKGLSIAH VKSHLQMYRS KKTDDPNQGD QGFSFEHGAG YTYNLSQLPM LQSFDQRPST  180
SLGYGGGSWT DHRRPVYRSP WRGLTARDST RTRQTIFSSQ PGERFHGVSN SILDDKNKNI  240
SFRINSHEAA HATKGVGEAV PRIHRSFLEG MKTFNKSWGQ SLSSNPNSST ASRPEDHIAT  300
TLSSYQRDNP RVAEEKENVL KRKRLLLSDD CNKSDQDLDL SLSLKVPRTH NNLGACLLED  360
EEKEHDDHED SKSLSLSLSS SSLSKLGRAI RKEDQIDHKK RKMSVLASPL DLTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1788142357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1788142357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1788142357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1788142357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g22590
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325720.0AC232572.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS005G02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634613.10.0PREDICTED: uncharacterized protein LOC106340283 isoform X2
TrEMBLA0A0D3BQA80.0A0A0D3BQA8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BI710.0A0A3P6BI71_BRAOL; Uncharacterized protein
STRINGBo4g025360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93592136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.10.0G2-like family protein