PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Tp4g20590

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 230aa MW: 25975.2 Da PI: 10.6348

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g20590	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.4	5.3e-13	78	124	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR riNs f+ Lr++lP++ K +Ka +L ++v+Y ++L Tp4g20590 78 KKHSDAERRRRLRINSQFASLRTILPNL-----VKQDKAYVLGETVRYFNEL 124 68***********************9.....7************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-12	66	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.361	75	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.52E-7	78	129	No hit	No description
Pfam	PF00010	1.2E-10	78	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-12	79	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.8E-10	81	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MVLLQHFFSE SIFSLVLCFM QLEQRMQPLS RCYNPTTYSA TMGRNYFTGA TTSSKLFSRG 60 LSATKPKSKI ETKEVAAKKH SDAERRRRLR INSQFASLRT ILPNLVKQDK AYVLGETVRY 120 FNELKKIVKD IPTTPDLEDN LRLSHCNNRD MARLVFSCSD REGLMSEISE SMKAVKAKAV 180 RAEVMTIGGR TKCALFVQGV NGNEGLVRLK KSLKPVVNGK SSSEPKKQQQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g20590

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ577587	0.0	AJ577587.1 Arabidopsis thaliana mRNA for putative bHLH131 transcription factor (bHLH131 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001320156.1	1e-125	transcription factor bHLH131-like protein
Swissprot	P0CB25	1e-126	BH131_ARATH; Transcription factor bHLH131
TrEMBL	D7M9K5	1e-125	D7M9K5_ARALL; Predicted protein
STRING	Al_scaffold_0007_233	1e-126	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13939	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	1e-110	bHLH family protein