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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g20010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | GRAS | ||||||||
Protein Properties | Length: 727aa MW: 81831.7 Da PI: 7.0089 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 373 | 3.9e-114 | 353 | 722 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s + +l+a++lf ++P+ k+s++++N+ Tp4g20010 353 LRSLLIHCAQAVAADDSRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSYFITNK 449 689***************************************************************9999...999************************ PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I + v ++ rvH+iDf+i +G+QWp+L++ ++ g+p++RiTg++ p++g ++++eetg+rLa +A+++gvpfe+++ +ak++++++le+L++++ Tp4g20010 450 TIRDLVGKSPRVHVIDFGILYGFQWPTLIHRFSM--YGSPKVRITGIEFPQPGfrPAQRVEETGQRLAAYAKHFGVPFEYKA-IAKKWDAIQLEDLDIDR 546 *********************************9..8***************9*****************************.7**************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E ++Vn+ ++ ++l+desv++es+rd+vL+l+ ++sP+++v+ + +n++ F++rf eal ++s++fd+l++ +pre+ er+++E e++gre+ nv+ Tp4g20010 547 DEITVVNCLYRAENLHDESVKVESCRDAVLSLIGKISPDLFVFGTVNGAYNAPFFVTRFREALFHFSSIFDMLDTVVPREDGERMFLEMEVFGREALNVI 646 **************************************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aceg er+er et+++W+ r +++G+ +vp++ +++k+ +++++ + + +++++ +l++gWk+r+++++S+W+ Tp4g20010 647 ACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLDKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 722 ***********************************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.297 | 327 | 702 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-111 | 353 | 722 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 727 aa Download sequence Send to blast |
MITDPGLNGL SGAISRTRLP DQSSSLLPNH SFTPVTVLDG FNYNHLSDNR NTVVTSAPDN 60 SAFTRGEEEE DPADEFDFSD AVLGYISQML MDEDMEDKAC MLQESLDLEA AERSLYEAIG 120 KKYPPSPEPN LAFAERNSES LDHVVPRNYT GDRIGSSGFI ARNGGIKPMS GFTLDFRNPQ 180 SRSPVLSVPQ SSYSSSNDLI TTIHGDGFEE SSNALYHPDA NRESQWLFRR GLEEASRFLP 240 EKNELILNFR EENSSNKGRK KPYRDEIVVE EERCSKLPAV FPETISRSDV VDKILVHVPG 300 GEGMKEFDAL RDVLKKGVEK KKTLVPQEGK RRARGKGRGR GGGKNVKKEV VDLRSLLIHC 360 AQAVAADDSR CAGQLLKQIR QHSTPFGDGN QRLAHCFANG LEARLAGTGS QIYKGIVSKP 420 RSAAAVLKAH QLFLACCPFR KLSYFITNKT IRDLVGKSPR VHVIDFGILY GFQWPTLIHR 480 FSMYGSPKVR ITGIEFPQPG FRPAQRVEET GQRLAAYAKH FGVPFEYKAI AKKWDAIQLE 540 DLDIDRDEIT VVNCLYRAEN LHDESVKVES CRDAVLSLIG KISPDLFVFG TVNGAYNAPF 600 FVTRFREALF HFSSIFDMLD TVVPREDGER MFLEMEVFGR EALNVIACEG WERVERPETY 660 KQWHVRAMRS GLVQVPFDPS IMKTSLDKVH TFYHKDFVID QDNRWLLQGW KGRTVMALSV 720 WKPDSKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-42 | 359 | 725 | 25 | 382 | Protein SCARECROW |
5b3h_A | 1e-42 | 359 | 725 | 24 | 381 | Protein SCARECROW |
5b3h_D | 1e-42 | 359 | 725 | 24 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g20010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004684 | 0.0 | AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410955.1 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | V4MIK6 | 0.0 | V4MIK6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410955.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |