PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g17890

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Trihelix

Protein Properties

Length: 373aa MW: 41454.3 Da PI: 9.5576

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g17890	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.7	4.6e-16	20	106	2	70
trihelix 2 WtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W+ +e+l+Liea++ +eer r++ + +W+++ +++++rg+ rs++qC++kw+nl + ykki+e e+ Tp4g17890 20 WMVNETLVLIEAKKMDEERRVRRRsiglpplqikqpeirnirPPELRWKWIEEFCWRRGCVRSQNQCNDKWDNLMRGYKKIREYESW 106 ***********97777666554488888888889999888999***********************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.086	12	94	IPR017877	Myb-like domain
Pfam	PF13837	1.9E-10	19	105	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MPDPSGGKEV VTREYRKGNW MVNETLVLIE AKKMDEERRV RRRSIGLPPL QIKQPEIRNI 60 RPPELRWKWI EEFCWRRGCV RSQNQCNDKW DNLMRGYKKI REYESWRVNL SFNTGSSSSA 120 AAASSYWNMD KSERKERNLP SNMFPQIYEA LVELVEKNSL PSSSAVAATA AVVNGDSGSS 180 GGQILRVCQQ SLGFVASMMA QPMPPIPATI VLPLPPPPPP PPPPPPPPPP PPQYLVLSHP 240 PLPQPPPATF HAEPMQATTV DTSPAKRRKT MPRETTSGGE RKSEEVAVGA ALSRSASVIA 300 QVIGESEEGQ ERRHKEMVKL QEKRLKIEQS KAEINRQGMT GLVDAINKLG TSIIALVSSS 360 SCHNNENHQE DAP

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MPDPSGGKEV VTREYRKGNW MVNETLVLIE AKKMDEERRV RRRSIGLPPL QIKQPEIRNI  60
RPPELRWKWI EEFCWRRGCV RSQNQCNDKW DNLMRGYKKI REYESWRVNL SFNTGSSSSA  120
AAASSYWNMD KSERKERNLP SNMFPQIYEA LVELVEKNSL PSSSAVAATA AVVNGDSGSS  180
GGQILRVCQQ SLGFVASMMA QPMPPIPATI VLPLPPPPPP PPPPPPPPPP PPQYLVLSHP  240
PLPQPPPATF HAEPMQATTV DTSPAKRRKT MPRETTSGGE RKSEEVAVGA ALSRSASVIA  300
QVIGESEEGQ ERRHKEMVKL QEKRLKIEQS KAEINRQGMT GLVDAINKLG TSIIALVSSS  360
SCHNNENHQE DAP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g17890

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410730.2	1e-147	uncharacterized protein LOC18027116
TrEMBL	V4MI01	1e-144	V4MI01_EUTSA; Uncharacterized protein
STRING	XP_006410730.1	1e-145	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-134	Trihelix family protein