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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g17110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | WRKY | ||||||||
Protein Properties | Length: 423aa MW: 45533.9 Da PI: 5.4241 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.9 | 6.7e-31 | 210 | 268 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Tp4g17110 210 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 268 699************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-31 | 203 | 270 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.109 | 204 | 270 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-26 | 207 | 270 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 209 | 269 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-26 | 211 | 268 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MDNFQGDLTD VVRGIGSGHL SSSPGPPEGP SPSSLSSPPI SDLHVDFPSV ASCQINPFGD 60 PFVSMNDPLL NLTANSGYFS GAGDSNSFAV LPKVPEDDHI KSQCSVFPRI RISQSNIIHD 120 TPKCISPAMA VSAAAGASPW GMINADTTNS PRNCLLVDNN NNTSSSSQIQ ISSSPRNFGI 180 KRRKSQAKKV VCIPAPAAMN SRSSGEVVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG 240 CSARKQVERS RTDPNMLVIT YTSEHNHPWP TQRNALAGST RSSSSSSTNP SFKSSTATAN 300 ANATTSASSR VSQNKDETNK SHLPSSSTPP SPYVAAAVKE ENVEERQDNM EFGNDVDDTY 360 RPEFQHQPED FFADLDELEE DSITMLLSQG FSGDNSGGGN LENKTTIPNV FSDFFDDDSS 420 RSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-25 | 184 | 271 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 3e-25 | 184 | 271 | 2 | 80 | Disease resistance protein RRS1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g17110 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ012167 | 0.0 | FJ012167.1 Brassica napus WRKY35 transcription factor (WRKY35) mRNA, complete cds. | |||
GenBank | KC246578 | 0.0 | KC246578.1 Brassica napus WRKY transcription factor 35.1 (WRKY35.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018439076.1 | 0.0 | PREDICTED: probable WRKY transcription factor 35 | ||||
Swissprot | O64747 | 0.0 | WRK35_ARATH; Probable WRKY transcription factor 35 | ||||
TrEMBL | A0A0A7RI83 | 0.0 | A0A0A7RI83_BRAOC; WRKY53 protein | ||||
TrEMBL | A0A0D3C476 | 0.0 | A0A0D3C476_BRAOL; Uncharacterized protein | ||||
STRING | XP_010504968.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3085 | 28 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 1e-152 | WRKY DNA-binding protein 35 |
Publications ? help Back to Top | |||
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