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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g16050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 23831.6 Da PI: 9.154 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.9 | 2e-21 | 69 | 118 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+W+AeIrdp + + +r++lg+f+taeeAa a+++a+ +++g+ Tp4g16050 69 YRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEEAALAYDKAAFEFRGH 118 9*******.**********9...3.35*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.35E-23 | 68 | 126 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.08E-36 | 68 | 127 | No hit | No description |
PROSITE profile | PS51032 | 24.948 | 68 | 125 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-34 | 68 | 126 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-15 | 68 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-39 | 68 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-12 | 69 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-12 | 91 | 107 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MHSGKRPLSP ESTAGKREEK EDLLCCSTLS ESDVSAFVSE LTDQPTTPFM DQSSSLTPQE 60 QSKSRQRNYR GVRQRPWGKW AAEIRDPNKA ARVWLGTFDT AEEAALAYDK AAFEFRGHKA 120 KLNFPEHILI SSTHRHPSTA TSHHRITVMP PPPIAPDILL DRYGQFQSIN SDSSANLSMT 180 MSSSSSSLNQ QGQLPKLEDG ENVKNISIHK RRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-26 | 67 | 125 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 7e-26 | 64 | 125 | 1 | 63 | ATERF1 |
3gcc_A | 7e-26 | 64 | 125 | 1 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00289 | DAP | Transfer from AT2G33710 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g16050 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY136456 | 1e-171 | AY136456.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds. | |||
GenBank | BT000236 | 1e-171 | BT000236.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g33710) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013646798.1 | 1e-123 | ethylene-responsive transcription factor ERF112-like | ||||
Swissprot | P93007 | 1e-99 | EF112_ARATH; Ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | A0A3P5ZCD5 | 1e-122 | A0A3P5ZCD5_BRACM; Uncharacterized protein | ||||
STRING | Bra005480.1-P | 1e-121 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 1e-82 | ERF family protein |