PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g15890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | Trihelix | ||||||||
Protein Properties | Length: 325aa MW: 35765 Da PI: 8.6551 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.9 | 1.6e-29 | 46 | 139 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rWt+qe+l+Li+++r e+r+rrg+ +++p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++ Tp4g15890 46 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETESYWVMRNDV 139 8**********************97778888888******************************************************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.7E-13 | 46 | 135 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-5 | 46 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.4 | 46 | 112 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MALEQLGLGV SAVDGDGNGV TQGGRENSAP SNEGGDDGVK TARLPRWTRQ EILVLIQGKR 60 VAENRVRRGR AAGMALGSGQ MEPKWASVSS YCRRHGVNRG PVQCRKRWSN LAGDYKKIKE 120 WESQIKEETE SYWVMRNDVR RDRKLPGFFD KEVYDIVDGS VIPPAIPALA LGLAPASTSA 180 EGLLSDLDRR EPARSPDKLN SASAPKSLQD VIIDKEKHAD SGADQGRVKE KHSEAANPEA 240 GSTSQEERKR KRTSADEDEK EEATKSMQNQ LIQILERNGQ LLAAQLEVQN SNLKLDREQR 300 KDHGDNLVAV LNKLADAVAK IADKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g15890 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024003747.1 | 0.0 | trihelix transcription factor ASR3 | ||||
Swissprot | Q8VZ20 | 0.0 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A1J3E8P9 | 0.0 | A0A1J3E8P9_NOCCA; Uncharacterized protein | ||||
STRING | XP_006410499.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6557 | 28 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-173 | Trihelix family protein |
Publications ? help Back to Top | |||
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