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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g13910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | B3 | ||||||||
Protein Properties | Length: 191aa MW: 22043.7 Da PI: 10.498 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.1 | 2.1e-10 | 76 | 159 | 15 | 80 |
-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EE CS B3 15 rlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfv 80 rl +p k +++ ++ k e+ ++l d+ r++evkl+ +k +g yv ++GW++ vkan+ k+gD+ Tp4g13910 76 RLLIPSKQLQSLdflteeesrilyeqsklKIRK-EGLSVVLVDPGLRTYEVKLRRWKVGGNlnYVVAGGWNKVVKANKFKAGDVT 159 566666666665666555555555555533333.6679***************9999998899********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03754 | 1.4E-34 | 39 | 149 | IPR005508 | B3 domain-containing protein |
Gene3D | G3DSA:2.40.330.10 | 9.5E-15 | 54 | 188 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-14 | 59 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.21E-11 | 59 | 158 | No hit | No description |
PROSITE profile | PS50863 | 9.897 | 62 | 179 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVKPDDHTIW KLDMLAKSSK TVFENKEKIG RTVESSSIQP EWLVKVMMKI KENVYDLKPI 60 IVRTLWQTDL NIMQSRLLIP SKQLQSLDFL TEEESRILYE QSKLKIRKEG LSVVLVDPGL 120 RTYEVKLRRW KVGGNLNYVV AGGWNKVVKA NKFKAGDVTR IWSFRYGRGK LCLALSPVEK 180 DSQGESSSRR S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g13910 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482435.1 | 1e-65 | PREDICTED: B3 domain-containing protein At2g31420-like | ||||
TrEMBL | A0A0D3C3G7 | 4e-62 | A0A0D3C3G7_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g176390.1 | 7e-63 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM273 | 10 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05930.1 | 3e-19 | B3 family protein |