PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g13140
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 315aa    MW: 35310.2 Da    PI: 10.3689
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g13140genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.4e-31249307360
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eHnh+k
  Tp4g13140 249 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 307
                99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-17199245IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-33235307IPR003657WRKY domain
PROSITE profilePS5081130.366242308IPR003657WRKY domain
SuperFamilySSF1182901.01E-26245307IPR003657WRKY domain
SMARTSM007742.0E-37247307IPR003657WRKY domain
PfamPF031061.5E-26249306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEEIEGTNRA AVESCHRVLN LLCRPHQQDH GYDMSLVSET REAVFRFKRV ATLLSKSVGH  60
ARFRRAKKLQ THLSQNIFLD PCLQRTELPS AQKAPVRRSG FHELSLRPTD SLTLGTRSFS  120
LNSNAKAPLL QLNQQAMPSS NFPNFLSFDN SSCTPTMSST RSFVSSLSID GSVANIEGRN  180
SFHLVGVPSS TDQSSQHSKR KCLMKGDEHG SIKCGSSSRC HCSKKRKHRV RRSIRVPAIS  240
NKVADIPPDD YSWRKYGQKP IKGSPYPRGY YKCSSMRGCP ARKHVERCLE DPAMLIVTYE  300
AEHNHPKLPS QAVTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-21235310276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g13140
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530390.0AK353039.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-E12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410164.10.0probable WRKY transcription factor 21
SwissprotO043361e-115WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLV4M9740.0V4M974_EUTSA; Uncharacterized protein
STRINGXP_006410164.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-98WRKY DNA-binding protein 21