PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g11650

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Dof

Protein Properties

Length: 339aa MW: 36088.7 Da PI: 9.4553

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g11650	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.1	4.4e-39	90	147	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 lkcprCds+ntkfCy+nny+l+qPr+fCkaCrryWt+GGalrnvPvGgg+r+nkk Tp4g11650 90 GPLKCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTHGGALRNVPVGGGCRRNKKG 147 5789***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-35	73	143	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.2E-33	91	146	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.786	92	146	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	94	130	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MVFSSVSSFL DPPINWPQSA NSNNHPHHLQ LQSGSLVSGH QVLSHHLPQN PSPNHNHVDT 60 TAAATVDPAD LNGSAAERAR LAKNSQPPEG PLKCPRCDSA NTKFCYFNNY NLTQPRHFCK 120 ACRRYWTHGG ALRNVPVGGG CRRNKKGKTG NSKSSSSSQN KQSTSMVNAP SPTTTSNVQL 180 QTNSQFPFLP TLQNLTQLGG IGLNLAALNG NNGGNGNTSS SFLNDLGFYH GATNTSGPVM 240 GNNNNENNTM TPLGSASHFA LLDRTMGLYS FPNEGNMGLS SSSASRVSQT APVKMEEAHL 300 GSISRPVSGL TSPGNQSNQY WTGLGLPGSS SNDYQQHLM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g11650

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT032877	0.0	BT032877.1 Arabidopsis thaliana unknown protein (At2g28810) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013631774.1	0.0	PREDICTED: dof zinc finger protein DOF2.2 isoform X1
Swissprot	Q9ZV33	0.0	DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBL	A0A0D3C2Q4	0.0	A0A0D3C2Q4_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6CIW7	0.0	A0A3P6CIW7_BRAOL; Uncharacterized protein
STRING	Bo4g166830.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5336	17	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.1	1e-161	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]