PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g11380
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family AP2
Protein Properties Length: 467aa    MW: 51203.2 Da    PI: 6.3298
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g11380genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17151200155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Tp4g11380 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 200
                78*******************......55************************997 PP
2AP239.81.1e-12243290152
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ +
  Tp4g11380 243 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIN 290
                89********.7******5553..2.26**********99*********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-15151208IPR016177DNA-binding domain
PfamPF008475.3E-9151200IPR001471AP2/ERF domain
PROSITE profilePS5103217.82152208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-17152208IPR001471AP2/ERF domain
SMARTSM003801.2E-32152214IPR001471AP2/ERF domain
CDDcd000187.41E-11152207No hitNo description
CDDcd000186.53E-23243303No hitNo description
SuperFamilySSF541714.32E-16243302IPR016177DNA-binding domain
PfamPF008474.0E-8243290IPR001471AP2/ERF domain
PROSITE profilePS5103215.237244301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-15244302IPR001471AP2/ERF domain
SMARTSM003802.6E-29244307IPR001471AP2/ERF domain
PRINTSPR003671.5E-5245256IPR001471AP2/ERF domain
PRINTSPR003671.5E-5283303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MLDLNLDAES PESTQYGDSY ADRQTSDGSG NRLEESGTST SSVINADADE DSCSTRAFTL  60
SFDILKVGSS GGGGVDESTA SLAGVTKEFF PVAGDCGHLR DVEGSSSRSW IDLSFDSSSY  120
GETKLVAPAP APAPVPTQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG  180
FDTAHAAARA YDRAAIKFRG VDADINFTIG DYEEDMKQVQ NLSKEEFVHI LRRQSTGFSR  240
GSSKYRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARAYDKAAIN SNGREAVTNF  300
ELSSYQNEIN PETNNESVHD KLDLNLGISL SPGNASKQNG RVFHFPSNTY ETQRGVSLTI  360
DNEFMGKPVN APLPYGSADH RAYWNGACPS YNNPIEGRAT EKRSEAEGGM MSNWGWQRPG  420
QTSAMRPQPP GAQPPLFSVA AASSGFSNFR QQLPNDNASR GYFYPQP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g11380
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296222.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLR0HUN30.0R0HUN3_9BRAS; Uncharacterized protein
STRINGXP_006296222.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.30.0related to AP2.7