PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g11330

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

LBD

Protein Properties

Length: 235aa MW: 25687.1 Da PI: 4.7354

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g11330	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.9	7.3e-43	59	158	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ e Tp4g11330 59 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVE 158 7**********************************************************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.323	58	159	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-42	59	156	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MLKMEINGGT PAATPTASAV AVAAVAEATT PVNSPSPTSS PPPPLSPQQP PQPPVVLSPC 60 AACKILRRRC AEKCVLAPYF PPTDPAKFTI AHRVFGASNI IKFLQELPES QRTDAVNSMV 120 YEAGARMRDP VYGCAGAIYH LQRQVSELQA QLAKTQVELV SMQLQRSDLL ELLYKMEQTK 180 LSAQKQGQQN MSFESSFESG DEFISSPDEV TNDLGFLEDN NNNNSSMSWW DPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-41	51	160	3	112	LOB family transfactor Ramosa2.1
5ly0_B	9e-41	51	160	3	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g11330

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473840	0.0	AB473840.1 Arabidopsis thaliana ASL7 mRNA for ASYMMETRIC LEAVES2-like 7 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140905.1	1e-144	PREDICTED: LOB domain-containing protein 11
Swissprot	Q9SK08	1e-134	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A291LQZ0	1e-143	A0A291LQZ0_BRARR; Transcription factor LBD11
TrEMBL	A0A397ZLR9	1e-143	A0A397ZLR9_BRACM; Uncharacterized protein
STRING	Bo4g165420.1	1e-142	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	1e-104	LOB domain-containing protein 11