PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g05520
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 71aa    MW: 7731.21 Da    PI: 9.9955
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g05520genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32.1e-11671676
               ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
         B3  6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76
               +++dv + + l lp +f+ ++g+kk +  ++tl  ++g +W  +l    k+g++ ++ GW +F++ang+k+
  Tp4g05520  6 VTKDVKA-CTLHLPSQFVMAIGIKKLG--KITLLGKDGTKWWGYL--LSKDGTVSIGYGWINFCEANGVKT 71
               5556654.77***********999755..8***************..99999****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.461171IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-12570IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-13570IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-9771IPR003340B3 DNA binding domain
CDDcd100175.31E-91371No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MTLALVTKDV KACTLHLPSQ FVMAIGIKKL GKITLLGKDG TKWWGYLLSK DGTVSIGYGW  60
INFCEANGVK T
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g05520
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013745925.22e-35B3 domain-containing protein REM12-like
SwissprotP0CAP41e-24REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078JGZ94e-34A0A078JGZ9_BRANA; BnaCnng48570D protein
TrEMBLA0A3P6C4E54e-34A0A3P6C4E5_BRAOL; Uncharacterized protein
STRINGBo4g154870.11e-34(Brassica oleracea)
STRINGBo4g154880.19e-34(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.18e-18B3 family protein