PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g03250
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 357aa    MW: 37230.5 Da    PI: 6.5856
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g03250genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11160205555
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  Tp4g03250 160 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 205
                99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-17153214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-13153209No hitNo description
PROSITE profilePS5088817.409155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16157214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-9160205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMNSSLLTPP SSSSSHIQTP ATTFDHEDFL DHIFASAPWP SVVDEANPPP PPPPSDGFVD  60
SRDQQIMMMP LPSHHQNDTV DGSSTHALYS GFSAAGSLPF HIPQGSGGGL MNQQGQTQTQ  120
PQPQPQASAS TATGGTAAGA GPPQSRTKVR ARRGQATDPH SIAERLRRER IAERMKALQE  180
LVPNGNKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA SVSSQISEAG GSHGNASSAV  240
AGGNQITGNS NDSLTMTEHQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT AISTATCHNR  300
NPLISGATDV GGRPSSPNLS GMTIQSTNTL KLNGNGNGVI EGSSSIAVKE AVSVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g03250
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1763700.0AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21.
GenBankBT0265120.0BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438414.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG90.0BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A397ZKX20.0A0A397ZKX2_BRACM; Uncharacterized protein
STRINGBra032111.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-156LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]