PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g01890
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 227aa    MW: 26544.8 Da    PI: 8.1342
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g01890genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.3e-11128174349
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                ++++ +r+++NRe+A+rsR RK+  ie+L+++v  L  eN++L ++l
  Tp4g01890 128 DDRKRKRMESNRESAKRSRIRKQRHIENLRDEVNRLGLENRELGNRL 174
                57899************************************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-14126190IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.2E-10128174No hitNo description
PROSITE profilePS5021710.289128191IPR004827Basic-leucine zipper domain
PfamPF001704.4E-9129174IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-10130177No hitNo description
CDDcd147022.49E-15131175No hitNo description
PROSITE patternPS000360133148IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MMSTVPAFCF AEPDLVNQLS DFQTGFTPWD FDCSDLFSVI RSTIEPVIPG PCSGECETGF  60
VRINTDFYDK KSGSNEYCTG HVKTNSGSDD SNCFQGVPSP QSDELDSEIK ATKHNRKTLN  120
RPVLLITDDR KRKRMESNRE SAKRSRIRKQ RHIENLRDEV NRLGLENREL GNRLRIFLYH  180
IEQISTDNNR LLSEQEILRR RFSEMRQILI LRQFQNQQQW GRNHQMI
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g01890
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404751.11e-124regulatory protein opaque-2
TrEMBLA0A1J3G1311e-127A0A1J3G131_NOCCA; Basic leucine zipper 43 (Fragment)
STRINGXP_006404751.11e-123(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.21e-112basic leucine-zipper 6