PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g01670
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26308 Da    PI: 10.2487
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g01670genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF756e-241059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               ri++++ rqvtfskRr+g++ KA+EL +LCdaev +iifs+t+kly+++s
  Tp4g01670 10 RIDDSTSRQVTFSKRRKGLINKAKELAILCDAEVGLIIFSTTDKLYDFAS 59
               8***********************************************86 PP
2K-box78.61.5e-2681171999
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                + +++ + +q+e+a L++e+ +Lq+++R+l Ge+L+ Ls+keL+++e++Le sl+ iR kK+++l+++i+el +k + +++en +L++k++
  Tp4g01670  81 NPASEVKFWQREAATLRQELYSLQENHRQLTGEQLNGLSVKELHNIESKLEMSLRGIRMKKEQILTNEIKELTRKRNLIHHENLELSRKVQ 171
                567889***********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.506161IPR002100Transcription factor, MADS-box
CDDcd002657.88E-37278No hitNo description
SuperFamilySSF554554.19E-29289IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-25323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-253859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2484170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.39686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048578Biological Processpositive regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGKIVIQR IDDSTSRQVT FSKRRKGLIN KAKELAILCD AEVGLIIFST TDKLYDFASS  60
SMKSAIERFN KTKMEQQQLL NPASEVKFWQ REAATLRQEL YSLQENHRQL TGEQLNGLSV  120
KELHNIESKL EMSLRGIRMK KEQILTNEIK ELTRKRNLIH HENLELSRKV QRIHQENVEL  180
NKKVYATSST NRLGLHELED AANESHAQVR LQLSQPEQSH YKTLSKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-19169169MEF2C
5f28_B5e-19169169MEF2C
5f28_C5e-19169169MEF2C
5f28_D5e-19169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g01670
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935580.0AB493558.1 Arabidopsis thaliana At2g22630 mRNA for hypothetical protein, partial cds, clone: RAAt2g22630.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746936.11e-146agamous-like MADS-box protein AGL17
SwissprotQ388401e-141AGL17_ARATH; Agamous-like MADS-box protein AGL17
TrEMBLA0A397ZKL81e-143A0A397ZKL8_BRACM; Uncharacterized protein
TrEMBLM4EN521e-143M4EN52_BRARP; Uncharacterized protein
STRINGBra030222.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.11e-143AGAMOUS-like 17
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]