PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g00420

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bZIP

Protein Properties

Length: 447aa MW: 49211.9 Da PI: 6.6858

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g00420	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.9	2.6e-09	277	335	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+ +r NRe+A rs ++K + + +Leekv++Le+ aL ++ + l++e+ Tp4g00420 277 KVVKRILANRESAARSKEKKAQHVSNLEEKVETLETDVVALTAHIQLFERAKRDLEDEN 335 67799999*****************************9999999998887777777666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.4E-13	273	337	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.841	275	338	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.6E-7	277	335	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.49E-9	277	326	No hit	No description
CDD	cd14703	8.92E-16	279	329	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-8	279	332	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MDSHDDTNSP PFGTSFDDST YFPNPFVNGG GETSERAVMP PPHRSSLPPL APSSQIPTTA 60 QPTRYGSQSF NPGPSHLRLV SQPTPVFSMP LMIPSCTAPM VNKDSAFPPI PFTRLNYASG 120 SGSGSSLPPR KDHRRASSDV ISGLNAFFAQ DNAPRPIFPK PIEMPVGVRS QKRSIGGRKR 180 HGDDWENGSK TVSCSKRRAG KEIDSSSRIC RSFSLDSSLN GKSSTSEESP PELPPSLGSL 240 EVLTNLVDGN DIVFTAYEME KIQASSRLRE LVGPTPKVVK RILANRESAA RSKEKKAQHV 300 SNLEEKVETL ETDVVALTAH IQLFERAKRD LEDENELLRT RIAGLNDHAR LRDDLINQLT 360 GQVNRLKLVT GEVSQHRNEF DRSNMQPAEA NMQPAEANMQ PADANMQPAD ANMQPAEANM 420 QPAEANMLQQ LNINQLHQQQ QQNNFDF

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MDSHDDTNSP PFGTSFDDST YFPNPFVNGG GETSERAVMP PPHRSSLPPL APSSQIPTTA  60
QPTRYGSQSF NPGPSHLRLV SQPTPVFSMP LMIPSCTAPM VNKDSAFPPI PFTRLNYASG  120
SGSGSSLPPR KDHRRASSDV ISGLNAFFAQ DNAPRPIFPK PIEMPVGVRS QKRSIGGRKR  180
HGDDWENGSK TVSCSKRRAG KEIDSSSRIC RSFSLDSSLN GKSSTSEESP PELPPSLGSL  240
EVLTNLVDGN DIVFTAYEME KIQASSRLRE LVGPTPKVVK RILANRESAA RSKEKKAQHV  300
SNLEEKVETL ETDVVALTAH IQLFERAKRD LEDENELLRT RIAGLNDHAR LRDDLINQLT  360
GQVNRLKLVT GEVSQHRNEF DRSNMQPAEA NMQPAEANMQ PADANMQPAD ANMQPAEANM  420
QPAEANMLQQ LNINQLHQQQ QQNNFDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	289	297	ARSKEKKAQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g00420

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19409	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	2e-35	bZIP family protein