PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g33790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | G2-like | ||||||||
Protein Properties | Length: 433aa MW: 47643.3 Da PI: 6.7314 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.5 | 3.1e-28 | 163 | 217 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFveaveqL G ekA+P++ilelm+v++Lt+++v+SHLQkYR++ Tp3g33790 163 KVKVDWTPELHRRFVEAVEQL-GVEKAVPSRILELMGVHCLTRHNVASHLQKYRSH 217 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.293 | 160 | 219 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-27 | 161 | 220 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.2E-18 | 162 | 220 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-26 | 163 | 217 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.6E-8 | 166 | 215 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MLALSPARNS TRDDCYDGEA EFHTTSCGFS IDPEEDFPEF ADHGDLLDII DFDDLFGVAG 60 DVLPDLEIDP EILAGDFSDH MNGSSTITTT SSSEKTDNSQ GETNKKGILG KGEEVVSKRD 120 HNETAVAETV VNYDGDSDRK RKYSSSSASS KNNRISNNEG KRKVKVDWTP ELHRRFVEAV 180 EQLGVEKAVP SRILELMGVH CLTRHNVASH LQKYRSHRKH VLAREAEAAN WTRKRHIYGL 240 DTTGANINGR SKTGWLAPAP TIGFPPPPSV AVAPPPVHHH HHHFRPLHVW GHPTVDQSVM 300 PHVWPKHLPP PSTAMATPPF WVSDTPYWPR IHNGTTPYLP TVATRFRAPP VAGIPQAMPP 360 HHTVYKPDHG FGGSRSLVDF HPSKESVDAA IGDVLTRPWL PLPLGLKPPA VDGVMTELHR 420 QGVSEVPPTA SCA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 9e-16 | 160 | 221 | 2 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g33790 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013675959.1 | 0.0 | transcription activator GLK1-like isoform X2 | ||||
Swissprot | Q9SIV3 | 0.0 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A1J3DUV9 | 0.0 | A0A1J3DUV9_NOCCA; Transcription activator GLK1 | ||||
STRING | Bo7g003410.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2209 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 0.0 | GBF's pro-rich region-interacting factor 1 |