PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g33400
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family CPP
Protein Properties Length: 582aa    MW: 62709.4 Da    PI: 7.7548
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g33400genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.24.3e-1596135242
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                +kk+CnCk+s+Clk+YCeCfaag++C+  C+C +C+N+ e+
  Tp3g33400  96 KKKHCNCKHSRCLKLYCECFAAGTYCDG-CNCVNCFNNVEN 135
                689*************************.********9875 PP
2TCR50.73.5e-16180219140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC +CkN e
  Tp3g33400 180 KHHKGCHCKKSGCLKKYCECFQANILCSDNCKCLGCKNFE 219
                589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-1795135IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.82496220IPR005172CRC domain
PfamPF036383.7E-1197132IPR005172CRC domain
SMARTSM011146.6E-20180221IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.2E-13183218IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MGEGDEFPPK KEVPEGSDIP TKKSARQLDF AGGSGSDVEH SQANKSPATS ISSLAATVVT  60
PIQPSQSQGP IRLPKPESPK SKPRPLVEAR DGTPLKKKHC NCKHSRCLKL YCECFAAGTY  120
CDGCNCVNCF NNVENEPARR EAVGSTLERN PNAFRPKIAS SPHDARDNRE AVGGGVMLGK  180
HHKGCHCKKS GCLKKYCECF QANILCSDNC KCLGCKNFEG SEDRQALFHG EHSHNAAYLQ  240
HANAAITGAI GSSGFASSPA PKRKKMQDMF FIQAAKDSST HRLGQGNSGK TTSSKPVSRR  300
GSNASLGSSK VVYRSLLADI IQPQDVKALC SVLVAVSEEA AKTSTEKRLK DQIETFLASS  360
AQDQGQDNNN GTEIEKAASG NEADKSGAEE SNSDGSKGKS LSPETLALMC DEQDTMLMVA  420
ASSNCSVEHS SQLPNGQDQV YAEQEKLVLT KFRDCLNRII SYGELKESNC SLSRMDLESP  480
LHAAVKIEPV VQQGAVANGV SQTTKQQPSQ LTSSHTQKTH THHQTFKNPN SQIPTKTRKC  540
LLLHEFLYML VALSIEVDGL SSVDRICGID IPPETTISAD QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-309722911132Protein lin-54 homolog
5fd3_B1e-309722911132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g33400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408925.10.0protein tesmin/TSO1-like CXC 6
SwissprotQ9SL700.0TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA0A1J3GTG60.0A0A1J3GTG6_NOCCA; Protein tesmin/TSO1-like CXC 6
STRINGXP_006408925.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.10.0Tesmin/TSO1-like CXC domain-containing protein