PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g31750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 270aa MW: 30695.4 Da PI: 8.9309 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100 | 1.7e-31 | 81 | 136 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++vrY+eC++NhAa+ Ggh+vDGCgEfm+s geegta++l CaAC+CHR+FHR+e + Tp3g31750 81 RSVRYRECQRNHAANSGGHVVDGCGEFMSS-GEEGTAESLLCAACDCHRSFHRKEID 136 579**************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 8.0E-35 | 69 | 145 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.0E-29 | 83 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.4E-29 | 84 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.417 | 85 | 134 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.89E-17 | 198 | 267 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-28 | 199 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.6E-29 | 206 | 263 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MEVREKKDEK MEMARGRSSP NHQMLDHRLP PYTCPQTADK EKPTTRRNGS NPDPDLDTNP 60 ISTIAPAPRS YARPQTTSPT RSVRYRECQR NHAANSGGHV VDGCGEFMSS GEEGTAESLL 120 CAACDCHRSF HRKEIDGMFV VKFNSFGHSQ RPILGHHVSP IMMSFGDCGG GGGGGRDPAE 180 SSTEDLNKFH QSFSGNGVDQ LQYHPKKRFR TKFNQEQKEK MMEFAERIGW RMSKTEDEEV 240 NRFCREINVK RQVFKVWMHN NKQGAKKKEM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-20 | 207 | 262 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g31750 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013695813.1 | 1e-169 | zinc-finger homeodomain protein 6-like | ||||
Swissprot | Q9ZPW7 | 1e-146 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A078JR93 | 1e-168 | A0A078JR93_BRANA; BnaCnng66730D protein | ||||
STRING | Bo9g026060.1 | 1e-168 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6515 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 1e-146 | homeobox protein 24 |