PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g22260
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 294aa    MW: 34762.4 Da    PI: 4.7601
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g22260genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-1398183286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W +qe  +L+e+  ++  +l+r++l+  +W ev++k+ +e   ers +qC+   +nl+++y+k+k   +k   +sss++++f++l+
  Tp3g22260  98 WREQEAFVLLEVWGDRFLQLGRRSLRNEDWNEVAEKVsEELRSERSETQCRRIVDNLKRKYRKEKIKVEKSGLGSSSKWSFFKKLD 183
                *************************************777889*********************9777766689999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-1997184No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGDSEDETGY PKKFYPLNRQ NHPMYSRPIP KRHAYYHEED DEQDDDEIEE YRQVEEEEEG  60
GYSHRGNERF QKRQKPNSKP VSGYDFAGPS DAKVAYDWRE QEAFVLLEVW GDRFLQLGRR  120
SLRNEDWNEV AEKVSEELRS ERSETQCRRI VDNLKRKYRK EKIKVEKSGL GSSSKWSFFK  180
KLDMLLGSSP KSELGLACGV DSGEFVFMNT KLLADSIERF GKIYEKMEKS KKEQMKELEK  240
MRADFQKDLE LQKKQIVERA QTEIARLREE EENHHDGESE DEEMENDSDV NLSD
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g22260
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488557.11e-157PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A087HCA41e-166A0A087HCA4_ARAAL; Uncharacterized protein
STRINGA0A087HCA41e-167(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97792733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-134Trihelix family protein