PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g17070
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 204aa    MW: 23251.4 Da    PI: 5.4644
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g17070genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.9e-1622113199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ffkv +ps +  + ++++p +f++  g+k   s  +tle++ g + ++kl  ++ ++++++++GW+eF++a+ + eg f+ ++++g+s+f  +v++f++
  Tp3g17070  22 FFKVVLPSTMKGN-MMRIPTRFVKLQGSK--LSEVVTLETPAGFKRSIKL--KRIGEEIWFQEGWSEFAEAHFISEGHFLFLEYKGNSSF--RVMIFDA 113
                7888877666665.6********555554..7789***************..**************************************..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-2218116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-2219116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.9721114IPR003340B3 DNA binding domain
PfamPF023627.3E-1522113IPR003340B3 DNA binding domain
CDDcd100171.69E-1622112No hitNo description
SMARTSM010193.0E-1722114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVTTRRTEAK VTTASLSPVN KFFKVVLPST MKGNMMRIPT RFVKLQGSKL SEVVTLETPA  60
GFKRSIKLKR IGEEIWFQEG WSEFAEAHFI SEGHFLFLEY KGNSSFRVMI FDASACEIEY  120
PLDEVRISDS DDEVIDVTDE GVLGTQGTRG NDQSVKDGNS GDKLKKRPRD DEFEKILNDV  180
DGINSLKVLE EEEVKRHFRG KQFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166DKLKKR
2162168KLKKRPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g17070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2401021e-149AC240102.1 Sisymbrium irio clone SIR-40E09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006406546.11e-103B3 domain-containing protein At3g18960
SwissprotQ84R273e-87Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBLA0A1J3J1491e-103A0A1J3J149_NOCCA; B3 domain-containing protein (Fragment)
STRINGXP_006406546.11e-102(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-89B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]