PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

M-type_MADS

Protein Properties

Length: 375aa MW: 42683 Da PI: 9.9932

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp3g16720	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.5	3e-22	31	75	6	50
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +s + ++++kR+++++KKA+ELS+LC+++v+vi+++s+g+l +++ Tp3g16720 31 SSLKAISLTKRQETVFKKAYELSTLCGIDVCVIYYGSDGELNTWP 75 677899**************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.1E-5	18	77	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-17	32	107	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.93E-21	34	101	No hit	No description
PROSITE profile	PS50066	12.236	34	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-14	35	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-5	40	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.2E-5	55	76	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MASSSSSSFP SSTKKPTKVS QIRQTLFKKP SSLKAISLTK RQETVFKKAY ELSTLCGIDV 60 CVIYYGSDGE LNTWPEDREK VKEMARRYSE LSEKKRRKKR VGLDQFIEKI NKGDSKKNKK 120 KKVKLGSTYK YPDWDPRFDN CSVEQLTELI QSLERSQTIL QHRLRAVVES QRQRNMHYRN 180 MAGQEQMIAT TTATATARND LQQHSNQVSM NLFNPGNGAL SQIPVSASAF NQAQSLAPIP 240 DSLTIYQNPS MERYMRLLGE QETGINTNML PYNNSVNVFP RQFYQNCFKV DDHTGFPGRQ 300 ETGINNVNVG DYSGSLWAQG TGINGLQNMD MYSYNSNNNT SGFSNQLVQF PTQRAASVFQ 360 SMDRSTQNIR HLYEM

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MASSSSSSFP SSTKKPTKVS QIRQTLFKKP SSLKAISLTK RQETVFKKAY ELSTLCGIDV  60
CVIYYGSDGE LNTWPEDREK VKEMARRYSE LSEKKRRKKR VGLDQFIEKI NKGDSKKNKK  120
KKVKLGSTYK YPDWDPRFDN CSVEQLTELI QSLERSQTIL QHRLRAVVES QRQRNMHYRN  180
MAGQEQMIAT TTATATARND LQQHSNQVSM NLFNPGNGAL SQIPVSASAF NQAQSLAPIP  240
DSLTIYQNPS MERYMRLLGE QETGINTNML PYNNSVNVFP RQFYQNCFKV DDHTGFPGRQ  300
ETGINNVNVG DYSGSLWAQG TGINGLQNMD MYSYNSNNNT SGFSNQLVQF PTQRAASVFQ  360
SMDRSTQNIR HLYEM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	97	KKRRK
2	93	98	KKRRKK
3	93	99	KKRRKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp3g16720

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009146116.1	1e-158	PREDICTED: agamous-like MADS-box protein AGL103
Swissprot	Q9LSB2	1e-111	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	M4E0P4	1e-157	M4E0P4_BRARP; Uncharacterized protein
STRING	Bra022341.1-P	1e-158	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	4e-99	AGAMOUS-like 103

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]