PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g13230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | TCP | ||||||||
Protein Properties | Length: 439aa MW: 48058.8 Da PI: 7.2029 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.4 | 6.3e-35 | 52 | 155 | 2 | 81 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................ssssasec 73 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak++i+el+++ + + Tp3g13230 52 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELAQLppwnpadairnaaanakprrtaakiqisP------S 145 79**************************************************************76666655555544444443333322211......0 PP TCP 74 ..eaesssss 81 ++++++ Tp3g13230 146 ppPPQQQQQH 155 1111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.8E-31 | 52 | 157 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.016 | 54 | 112 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MADDDEAHHF LHPPPPPPSS MRHRVTSEAA DATNGGCGEI VEVQGGHIVR STGRKDRHSK 60 VCTAKGPRDR RVRLSAHTAI QFYDVQDRLG FDRPSKAVDW LIKKAKTSID ELAQLPPWNP 120 ADAIRNAAAN AKPRRTAAKI QISPSPPPPQ QQQQHLQFGG TRAVGFDGAA ENPSIDNESS 180 FLPPSMDSDS IADTIKSFFP VVGSSTEAPP NQLMHNYHHH HHHHNHPPDL LSRTNSQNQD 240 LRLSLQSFPD GPPSLLHHHQ QQQHHHHHSA SASVAEPVLF YGQSNPLGYD TSTGGWEQHS 300 SEFGRIQRLV AWNSGGATDT GNGGGGGFLF APPHPSTTSF QPVLGQSQLF SQRGPLQSSY 360 TPMIRAWFDP HHHQSISTDD LHHHHIPPPV HQSAIPGIGF ASGEFSSGFR IPARFQGQEE 420 EQHDGLTNKP SSASSISRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 59 | 112 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 59 | 112 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g13230 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407022.1 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 0.0 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | V4LDG9 | 0.0 | V4LDG9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407022.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-171 | TCP family protein |