PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g09680
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family MYB
Protein Properties Length: 646aa    MW: 73665 Da    PI: 8.8807
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g09680genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-07462504140
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      +++W++eE + l ++  ++++g   +W+ I++++g+gR+ +++
        Tp3g09680 462 KKPWSKEEIDMLRKGMIKYPKGtsrRWEVISEYIGTGRSVEEI 504
                      689***********************************99876 PP
2Myb_DNA-binding23.51.3e-07590633445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W+   +  lv+a k ++++   +W+++a+ ++ g+t  qck ++ 
        Tp3g09680 590 WSSVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVIQCKKKFA 633
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1108.6E-2195200IPR001623DnaJ domain
SuperFamilySSF465651.3E-2096177IPR001623DnaJ domain
SMARTSM002718.9E-1698173IPR001623DnaJ domain
PfamPF002263.4E-1799178IPR001623DnaJ domain
CDDcd062577.74E-1399170IPR001623DnaJ domain
PROSITE profilePS5007618.0399181IPR001623DnaJ domain
PRINTSPR006254.5E-8104122IPR001623DnaJ domain
PRINTSPR006254.5E-8122137IPR001623DnaJ domain
PRINTSPR006254.5E-8153173IPR001623DnaJ domain
PROSITE patternPS006360158177IPR018253DnaJ domain, conserved site
SuperFamilySSF466898.22E-8454505IPR009057Homeodomain-like
PROSITE profilePS500906.226457512IPR017877Myb-like domain
SMARTSM007176.2E-7461514IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-5461504IPR009057Homeodomain-like
PfamPF002496.4E-6462504IPR001005SANT/Myb domain
CDDcd001672.85E-4464504No hitNo description
SMARTSM007172.1E-7586638IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-8587635IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-4589634IPR009057Homeodomain-like
PfamPF002491.2E-5590634IPR001005SANT/Myb domain
PROSITE profilePS500906.841590636IPR017877Myb-like domain
CDDcd001673.27E-5590636No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MPSCRNDSAI KLITYSEELV DGKPFYAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP  60
TDNEGSDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH YALLGLSNLR YLATEDQIRK  120
SYREAALKHH PDKLATLLLA EETEEAKEAK KDEIESHFKA IQEAYEVLMD PTRRRIFDST  180
DEFDDEVPTD CSPQDFFKVF GPAFKRNARW SVNQRIPDLG DENTKLKDVD KFYNFWYAFK  240
SWREFPDEEE HDLEQADSRE ERRWMEKENA KTTAKARKEE HARIRTLVDN AYRKDPRIVK  300
RKEEEKAEKQ QKKEAKLMAK KKQAEEAAIA AEEEKRRKEE EEKRAAESAQ QQKKAKEKEK  360
KLIRKERNRL RTLSAPLVAQ RLLEISEEDI ENLCMSLNIE QLQNLCDKMG NKEGLELAKV  420
IKDGCSSSRN HEANSKEKES EKPKGGAEPT NRVSLLDNTQ KKKPWSKEEI DMLRKGMIKY  480
PKGTSRRWEV ISEYIGTGRS VEEILKATKT VLLQKPDSAK AFDSFLEKRK PTVSIASPLS  540
TREELGESLP TTVTTTTKSP SKETVVGKSS SSQSSDNNGE ASGSSDTDGW SSVQERALVQ  600
ALKTFPKETS QRWERVAAAV PGKTVIQCKK KFAELKEIIR SKKTGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A5e-1518829813123Zuotin
5dje_B5e-1518829813123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319337KKKQAEEAAIAAEEEKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g09680
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0081530.0AC008153.5 Arabidopsis thaliana chromosome 3 BAC F24K9 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_187752.20.0DnaJ and Myb-like DNA-binding domain-containing protein
RefseqXP_010486796.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A178VPF00.0A0A178VPF0_ARATH; Uncharacterized protein
STRINGAT3G11450.10.0(Arabidopsis thaliana)
STRINGXP_010486796.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain