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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g09420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | Trihelix | ||||||||
Protein Properties | Length: 289aa MW: 32515.2 Da PI: 4.7411 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46 | 1.4e-14 | 28 | 108 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +Liea ++ +l+rg+l++++W+ev++++ ++ g ++ +qCk++++ l+k+yk +k+ ++ t+ +fd+l+ Tp3g09420 28 WSEDATATLIEAWGDRYVHLNRGNLRQNDWKEVADAVnssHANGRPKTDVQCKNRIDTLKKKYKTEKAKPSS-------TWCFFDRLD 108 *************************************999999999*******************9998875.......699999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.6E-25 | 26 | 109 | No hit | No description |
SMART | SM00595 | 6.7E-4 | 35 | 115 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
METTPETQSK SQSQTGSQRL PAGREDWWSE DATATLIEAW GDRYVHLNRG NLRQNDWKEV 60 ADAVNSSHAN GRPKTDVQCK NRIDTLKKKY KTEKAKPSST WCFFDRLDFL IGPVAKKSGG 120 TGAVKSALMN PNAGSKSSGS SLDDDDDDDD DDVGDWGFVV RKHRRVEDVD PSEGSSCREL 180 ATAILKLGEV YERIEGAKQQ MMIELEKQRM EAAKELELQR MNMLMEMQME LEKSKLGKRR 240 AASVELLSAF VLSIRGFGTI SSDETLSSYS WFCFQGYEYS SCDDEITET |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g09420 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353551 | 0.0 | AK353551.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-B11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407472.1 | 1e-148 | trihelix transcription factor ASIL2 | ||||
TrEMBL | E4MYF4 | 1e-146 | E4MYF4_EUTHA; mRNA, clone: RTFL01-52-B11 | ||||
TrEMBL | V4LEM3 | 1e-146 | V4LEM3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407472.1 | 1e-147 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11100.1 | 1e-112 | sequence-specific DNA binding transcription factors |