PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g08730
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 403aa    MW: 43666 Da    PI: 7.0961
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g08730genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00048184206123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+++F++   L  H  +H
  Tp3g08730 184 YQCKTCDRTFPSFQALGGHRASH 206
                9***********99999998887 PP
2zf-C2H212.90.00032263285123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++Cg  F++   L  H+r+H
  Tp3g08730 263 HECGICGAEFTSGQALGGHMRRH 285
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-8183206No hitNo description
PfamPF139122.4E-12183208IPR007087Zinc finger, C2H2
SMARTSM003550.028184206IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471184211IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-8258285No hitNo description
Gene3DG3DSA:3.30.160.608.4E-4261287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.6E-11262287IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93263287IPR007087Zinc finger, C2H2
SMARTSM003550.047263285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265285IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
METSEEAKSA AKEQSLILKG KRTKRQRPQS PIPFSIVPPM SLQEPDVEEE SASLVSKEKS  60
PNDEIDNDNK NDNNVLINGV TSSSSASSSS NNNATLKAAA DEEDQDMANC LILLAQGHSL  120
PHHNRNHQQP QPQQQTRQLM ISYQESGNNN NNAYRSSSRR FLETSSSNGT TTNGGGGRAG  180
YYVYQCKTCD RTFPSFQALG GHRASHKKPK AASGLHSDHD LKKSIYDDAV SLHLNNVLNT  240
TPNNNNNHRS LVVYGKASNN KVHECGICGA EFTSGQALGG HMRRHRGAVV AAAAASTATV  300
AVAATAPTAN TALSLSPMSF DQMSDGPVYP IQAPVKRARS AVVSLDLDLN LPAPEDENRV  360
NGLSFASKQE HEQEHEQTQQ NKQREEQKSL VLSSAPTLVD CHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g08730
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0115600.0AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134280.0AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484714.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A397ZEM10.0A0A397ZEM1_BRACM; Uncharacterized protein
STRINGXP_010484714.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10470.11e-158C2H2 family protein