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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g06590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | CO-like | ||||||||
Protein Properties | Length: 369aa MW: 40410.4 Da PI: 5.9292 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.8 | 1.7e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ Tp3g06590 4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44 6*****************************65677777765 PP | |||||||
2 | zf-B_box | 22.2 | 2.9e-07 | 46 | 95 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.............Htvv 40 +C++++ ++++ C + ++ lC++C ++H++ H+++ Tp3g06590 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnnnnnssssssnnHKRQ 95 68*****************************8877777777777777765 PP | |||||||
3 | CCT | 60.4 | 6.1e-21 | 312 | 355 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ Tp3g06590 312 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 355 99***************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.798 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.13E-8 | 4 | 47 | No hit | No description |
SMART | SM00336 | 1.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.916 | 43 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.63E-5 | 47 | 76 | No hit | No description |
SMART | SM00336 | 1.2 | 48 | 97 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.0E-15 | 312 | 354 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.338 | 312 | 354 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC 60 VEERVSLCQN CDWSGHNNNN NNNSSSSSSN NHKRQTISCY SGCPSSSELA SIWSFCLDLA 120 GQSVCEQEMG MMNIDDDGQT NQNCNEDKKD VVVGSSSRPE TSSAAQANPS VAKDVGVCED 180 DFYGNLGMDE VDLALENYEE LFGTAFNPSG ELFGQSGIDN LFQKHQAAPE GGNSVQPAGS 240 NDSFMSSKTE PIICFTSKPA HSNISFSGVT GESSAGDFQE CGASSSMQLS GEPPWYPQTS 300 QDNNACSHSV TRNNAVMRYK EKKKARKFDK RVRYASRKAR ADVRRRVKGR FVKAGEAYDY 360 DPLTPTRSY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g06590 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK316934 | 0.0 | AK316934.1 Arabidopsis thaliana AT3G07650 mRNA, complete cds, clone: RAFL14-22-K23. | |||
GenBank | BT029490 | 0.0 | BT029490.1 Arabidopsis thaliana At3g07650 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407812.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 0.0 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | V4LFJ1 | 0.0 | V4LFJ1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407811.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 0.0 | CONSTANS-like 9 |