PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g06410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | FAR1 | ||||||||
Protein Properties | Length: 215aa MW: 24761.4 Da PI: 8.6009 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 94 | 1.9e-29 | 48 | 137 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ +GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka ++vkkek+gkw+vt++++eHnH+l p Tp3g06410 48 SFYDSYATGMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRLRPRR-SESRKPRAITREGCKALIVVKKEKSGKWVVTRFVKEHNHPLLP 137 5********************************************99.9***************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.0E-28 | 48 | 137 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MCCGVAVEGN ILRGEDVEMM ENTVTDEASS VVEPFLGMEF ESEEAAKSFY DSYATGMGFV 60 MRVDAFRRSM RDGTVVWRRL VCNKEGFRRL RPRRSESRKP RAITREGCKA LIVVKKEKSG 120 KWVVTRFVKE HNHPLLPLLP NGRRLSQSPD EKDTKIQELC TELSRERRRC AALQQQLDVA 180 LKEMEEHSNY LSVNINNVIQ IVREIESNTF TKPFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g06410 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009147067.1 | 1e-124 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 3e-30 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A397ZFM9 | 1e-123 | A0A397ZFM9_BRACM; Uncharacterized protein | ||||
STRING | Bostr.22252s0282.1.p | 1e-125 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13524 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-108 | FAR1 family protein |
Publications ? help Back to Top | |||
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