PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g04730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28592.4 Da PI: 9.7932 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.1 | 4.2e-17 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ tf+kR+ g +KK +ELSvLC+++++ +i+s+ Tp3g04730 11 ITNDSMRKSTFAKRKRGFFKKIHELSVLCGIKACAVIYSP 50 89************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.3E-22 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.03 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.63E-34 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 7.59E-24 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-15 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.8E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MTRKKLNLAY ITNDSMRKST FAKRKRGFFK KIHELSVLCG IKACAVIYSP FSSNPEVWPS 60 NSGVRNVVEK FENVAEMEQE KKMVNHEGFL RQSIIKTMEN NNKKMKDNKE RTMKEAMFQI 120 LAGKGGNFKL TGRNREDLCN YIDHYLKELH HHRNQILNQS HLEYGESSSA ANVMSPSSAI 180 AERSNLNVNH NQYEQKFGGY PIVAQDGLYN PNQQENWLVN QMMNHPHQMR FAMMDDNNRY 240 YHHQS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g04730 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024015652.1 | 1e-127 | agamous-like MADS-box protein AGL80 isoform X2 | ||||
TrEMBL | A0A078GME9 | 1e-116 | A0A078GME9_BRANA; BnaA05g31440D protein | ||||
STRING | AT3G05860.1 | 1e-113 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.3 | 1e-101 | M-type_MADS family protein |